Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 28417 | 0.66 | 0.827708 |
Target: 5'- cCCGGCU-CCCGCGGAgauGGaGCUCGc -3' miRNA: 3'- -GGCUGGuGGGCGUCUacgUCaUGAGC- -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 16209 | 0.66 | 0.800503 |
Target: 5'- cCCGACaCAgCCGUGGcgGCuGUGCgCGc -3' miRNA: 3'- -GGCUG-GUgGGCGUCuaCGuCAUGaGC- -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 807 | 0.66 | 0.800503 |
Target: 5'- cCCGGCaggcagACCuCGCAuggccccucGAUGUGGUGCUCa -3' miRNA: 3'- -GGCUGg-----UGG-GCGU---------CUACGUCAUGAGc -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 46390 | 0.66 | 0.836402 |
Target: 5'- aUGGCUGCCCGCcguggacguAGAcGCAGUGgUCc -3' miRNA: 3'- gGCUGGUGGGCG---------UCUaCGUCAUgAGc -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 40200 | 0.66 | 0.836402 |
Target: 5'- gCGACC-CCCG-GGGUGCAGUcACa-- -3' miRNA: 3'- gGCUGGuGGGCgUCUACGUCA-UGagc -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 37038 | 0.67 | 0.79109 |
Target: 5'- uCCGGCCAUcgccagggUCGguGAUGgGGUgGCUCa -3' miRNA: 3'- -GGCUGGUG--------GGCguCUACgUCA-UGAGc -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 4205 | 0.67 | 0.771808 |
Target: 5'- uCC-ACCAUCCGCuGGAUGCGGaUGCcagCGu -3' miRNA: 3'- -GGcUGGUGGGCG-UCUACGUC-AUGa--GC- -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 21536 | 0.67 | 0.771808 |
Target: 5'- uUGACCACCCGC----GCGGUGgcCUCa -3' miRNA: 3'- gGCUGGUGGGCGucuaCGUCAU--GAGc -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 27096 | 0.67 | 0.771808 |
Target: 5'- aCCGuCCACUCGCAcccGGUGgAGgcaaGCUCa -3' miRNA: 3'- -GGCuGGUGGGCGU---CUACgUCa---UGAGc -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 19917 | 0.67 | 0.771808 |
Target: 5'- gCCGGggUCACCgCGCAGcacGCGGUACUgGc -3' miRNA: 3'- -GGCU--GGUGG-GCGUCua-CGUCAUGAgC- -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 31991 | 0.67 | 0.79109 |
Target: 5'- gCGGCCGCCgCG-AGGUaGUAGUACUgGc -3' miRNA: 3'- gGCUGGUGG-GCgUCUA-CGUCAUGAgC- -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 2112 | 0.67 | 0.741894 |
Target: 5'- aCGACCACCUGgccgcggcCGGAUG-GGUGCUgGg -3' miRNA: 3'- gGCUGGUGGGC--------GUCUACgUCAUGAgC- -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 65166 | 0.67 | 0.781522 |
Target: 5'- gCGACCACCCgaGCGGGgaucgUGgAGUACg-- -3' miRNA: 3'- gGCUGGUGGG--CGUCU-----ACgUCAUGagc -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 16804 | 0.67 | 0.771808 |
Target: 5'- gCC-ACCGCCCGUcauacccgGGAacagGcCGGUGCUCGg -3' miRNA: 3'- -GGcUGGUGGGCG--------UCUa---C-GUCAUGAGC- -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 38940 | 0.67 | 0.79109 |
Target: 5'- aCCGGCCACCgUGCAucUGCGGcugACcgCGg -3' miRNA: 3'- -GGCUGGUGG-GCGUcuACGUCa--UGa-GC- -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 6122 | 0.67 | 0.751983 |
Target: 5'- uCCGAUUGCCCGCAuccaguccgcGAUGgacaAGUACgUCGg -3' miRNA: 3'- -GGCUGGUGGGCGU----------CUACg---UCAUG-AGC- -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 66396 | 0.68 | 0.7317 |
Target: 5'- cCUGAuCCACUCGCAGGUcccCGGUgaGCUCa -3' miRNA: 3'- -GGCU-GGUGGGCGUCUAc--GUCA--UGAGc -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 64856 | 0.68 | 0.711041 |
Target: 5'- gCGACCucACCCaGCGG-UGaAGUGCUCGc -3' miRNA: 3'- gGCUGG--UGGG-CGUCuACgUCAUGAGC- -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 67504 | 0.68 | 0.700597 |
Target: 5'- aCGGCCugCUGCGcGAgucGUaugAGUACUCGa -3' miRNA: 3'- gGCUGGugGGCGU-CUa--CG---UCAUGAGC- -5' |
|||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 14505 | 0.68 | 0.735789 |
Target: 5'- cUCGGCCGCCUGCuugcgcuuggcgucgGcGAUGCGGUuCUCc -3' miRNA: 3'- -GGCUGGUGGGCG---------------U-CUACGUCAuGAGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home