miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18445 3' -55.2 NC_004681.1 + 35501 1.11 0.001207
Target:  5'- uCCGACCACCCGCAGAUGCAGUACUCGg -3'
miRNA:   3'- -GGCUGGUGGGCGUCUACGUCAUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 29766 0.73 0.423578
Target:  5'- gCGACCugCUGcCAGGUGCAGccaGCUUGc -3'
miRNA:   3'- gGCUGGugGGC-GUCUACGUCa--UGAGC- -5'
18445 3' -55.2 NC_004681.1 + 73991 0.71 0.530396
Target:  5'- cUCGACUGuCUCGUAGGcauugcuUGCAGUGCUCa -3'
miRNA:   3'- -GGCUGGU-GGGCGUCU-------ACGUCAUGAGc -5'
18445 3' -55.2 NC_004681.1 + 63679 0.71 0.531426
Target:  5'- aUGACCACCUGCAaguGGUGCGccgcggACUCGu -3'
miRNA:   3'- gGCUGGUGGGCGU---CUACGUca----UGAGC- -5'
18445 3' -55.2 NC_004681.1 + 50973 0.7 0.573165
Target:  5'- -aGGCCGCCUGCu--UGUcggGGUACUCGg -3'
miRNA:   3'- ggCUGGUGGGCGucuACG---UCAUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 19704 0.7 0.583731
Target:  5'- aUCGACCACgCCGCAGcgcgccCAGaGCUCGu -3'
miRNA:   3'- -GGCUGGUG-GGCGUCuac---GUCaUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 53342 0.7 0.583731
Target:  5'- uUGGCCGCCUgguGCAGGUGCc--ACUCGa -3'
miRNA:   3'- gGCUGGUGGG---CGUCUACGucaUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 60897 0.7 0.583731
Target:  5'- aCC--CCACCUGgGGGUGUAGUGCUgGa -3'
miRNA:   3'- -GGcuGGUGGGCgUCUACGUCAUGAgC- -5'
18445 3' -55.2 NC_004681.1 + 47618 0.7 0.594335
Target:  5'- aCGACgACCUGC-GAUGCAGUug-CGg -3'
miRNA:   3'- gGCUGgUGGGCGuCUACGUCAugaGC- -5'
18445 3' -55.2 NC_004681.1 + 5206 0.7 0.594335
Target:  5'- gCCGAgCugUCGCcacAGAUGCAGgACUCc -3'
miRNA:   3'- -GGCUgGugGGCG---UCUACGUCaUGAGc -5'
18445 3' -55.2 NC_004681.1 + 4784 0.7 0.594335
Target:  5'- gCGuCCACUCGaAGAUGCGGUGCa-- -3'
miRNA:   3'- gGCuGGUGGGCgUCUACGUCAUGagc -5'
18445 3' -55.2 NC_004681.1 + 66449 0.7 0.604969
Target:  5'- gCGACU-CCCGCGGcGUGCAGaaGCUCa -3'
miRNA:   3'- gGCUGGuGGGCGUC-UACGUCa-UGAGc -5'
18445 3' -55.2 NC_004681.1 + 2119 0.7 0.615625
Target:  5'- aCUGGCCAccCCCGCuGAUGUGGUAaccCGg -3'
miRNA:   3'- -GGCUGGU--GGGCGuCUACGUCAUga-GC- -5'
18445 3' -55.2 NC_004681.1 + 8625 0.7 0.615625
Target:  5'- uCUGGCCGauggCCGCGGggGCGGU-CUCa -3'
miRNA:   3'- -GGCUGGUg---GGCGUCuaCGUCAuGAGc -5'
18445 3' -55.2 NC_004681.1 + 32365 0.69 0.626294
Target:  5'- aCCGAUCcgGCCCGCGGcgaGUGGaACUCGg -3'
miRNA:   3'- -GGCUGG--UGGGCGUCua-CGUCaUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 5715 0.69 0.636968
Target:  5'- aCCGG-CACCgGCcuGGAaGUAGUACUCGu -3'
miRNA:   3'- -GGCUgGUGGgCG--UCUaCGUCAUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 45164 0.69 0.636968
Target:  5'- -aGACCGuCgCGCAGGUGCAGU-CUUu -3'
miRNA:   3'- ggCUGGU-GgGCGUCUACGUCAuGAGc -5'
18445 3' -55.2 NC_004681.1 + 25240 0.69 0.657231
Target:  5'- gCGGCCauggcGCCCGCGGcgGCGGUugggugcGCUUc -3'
miRNA:   3'- gGCUGG-----UGGGCGUCuaCGUCA-------UGAGc -5'
18445 3' -55.2 NC_004681.1 + 74837 0.69 0.668929
Target:  5'- gCGGaggaCACCCGCggccGGAUGCuccAGUGCUUGc -3'
miRNA:   3'- gGCUg---GUGGGCG----UCUACG---UCAUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 12974 0.68 0.69009
Target:  5'- gUGGUCACCCGCAGcgGCcguAGUGCcCGa -3'
miRNA:   3'- gGCUGGUGGGCGUCuaCG---UCAUGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.