miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18445 3' -55.2 NC_004681.1 + 807 0.66 0.800503
Target:  5'- cCCGGCaggcagACCuCGCAuggccccucGAUGUGGUGCUCa -3'
miRNA:   3'- -GGCUGg-----UGG-GCGU---------CUACGUCAUGAGc -5'
18445 3' -55.2 NC_004681.1 + 2112 0.67 0.741894
Target:  5'- aCGACCACCUGgccgcggcCGGAUG-GGUGCUgGg -3'
miRNA:   3'- gGCUGGUGGGC--------GUCUACgUCAUGAgC- -5'
18445 3' -55.2 NC_004681.1 + 2119 0.7 0.615625
Target:  5'- aCUGGCCAccCCCGCuGAUGUGGUAaccCGg -3'
miRNA:   3'- -GGCUGGU--GGGCGuCUACGUCAUga-GC- -5'
18445 3' -55.2 NC_004681.1 + 4205 0.67 0.771808
Target:  5'- uCC-ACCAUCCGCuGGAUGCGGaUGCcagCGu -3'
miRNA:   3'- -GGcUGGUGGGCG-UCUACGUC-AUGa--GC- -5'
18445 3' -55.2 NC_004681.1 + 4784 0.7 0.594335
Target:  5'- gCGuCCACUCGaAGAUGCGGUGCa-- -3'
miRNA:   3'- gGCuGGUGGGCgUCUACGUCAUGagc -5'
18445 3' -55.2 NC_004681.1 + 5206 0.7 0.594335
Target:  5'- gCCGAgCugUCGCcacAGAUGCAGgACUCc -3'
miRNA:   3'- -GGCUgGugGGCG---UCUACGUCaUGAGc -5'
18445 3' -55.2 NC_004681.1 + 5715 0.69 0.636968
Target:  5'- aCCGG-CACCgGCcuGGAaGUAGUACUCGu -3'
miRNA:   3'- -GGCUgGUGGgCG--UCUaCGUCAUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 6122 0.67 0.751983
Target:  5'- uCCGAUUGCCCGCAuccaguccgcGAUGgacaAGUACgUCGg -3'
miRNA:   3'- -GGCUGGUGGGCGU----------CUACg---UCAUG-AGC- -5'
18445 3' -55.2 NC_004681.1 + 8625 0.7 0.615625
Target:  5'- uCUGGCCGauggCCGCGGggGCGGU-CUCa -3'
miRNA:   3'- -GGCUGGUg---GGCGUCuaCGUCAuGAGc -5'
18445 3' -55.2 NC_004681.1 + 12974 0.68 0.69009
Target:  5'- gUGGUCACCCGCAGcgGCcguAGUGCcCGa -3'
miRNA:   3'- gGCUGGUGGGCGUCuaCG---UCAUGaGC- -5'
18445 3' -55.2 NC_004681.1 + 14505 0.68 0.735789
Target:  5'- cUCGGCCGCCUGCuugcgcuuggcgucgGcGAUGCGGUuCUCc -3'
miRNA:   3'- -GGCUGGUGGGCG---------------U-CUACGUCAuGAGc -5'
18445 3' -55.2 NC_004681.1 + 16209 0.66 0.800503
Target:  5'- cCCGACaCAgCCGUGGcgGCuGUGCgCGc -3'
miRNA:   3'- -GGCUG-GUgGGCGUCuaCGuCAUGaGC- -5'
18445 3' -55.2 NC_004681.1 + 16804 0.67 0.771808
Target:  5'- gCC-ACCGCCCGUcauacccgGGAacagGcCGGUGCUCGg -3'
miRNA:   3'- -GGcUGGUGGGCG--------UCUa---C-GUCAUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 19704 0.7 0.583731
Target:  5'- aUCGACCACgCCGCAGcgcgccCAGaGCUCGu -3'
miRNA:   3'- -GGCUGGUG-GGCGUCuac---GUCaUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 19917 0.67 0.771808
Target:  5'- gCCGGggUCACCgCGCAGcacGCGGUACUgGc -3'
miRNA:   3'- -GGCU--GGUGG-GCGUCua-CGUCAUGAgC- -5'
18445 3' -55.2 NC_004681.1 + 21536 0.67 0.771808
Target:  5'- uUGACCACCCGC----GCGGUGgcCUCa -3'
miRNA:   3'- gGCUGGUGGGCGucuaCGUCAU--GAGc -5'
18445 3' -55.2 NC_004681.1 + 24105 0.68 0.7317
Target:  5'- gCCGaACCACCCGaGGAUGUug-GCUgGg -3'
miRNA:   3'- -GGC-UGGUGGGCgUCUACGucaUGAgC- -5'
18445 3' -55.2 NC_004681.1 + 25240 0.69 0.657231
Target:  5'- gCGGCCauggcGCCCGCGGcgGCGGUugggugcGCUUc -3'
miRNA:   3'- gGCUGG-----UGGGCGUCuaCGUCA-------UGAGc -5'
18445 3' -55.2 NC_004681.1 + 27096 0.67 0.771808
Target:  5'- aCCGuCCACUCGCAcccGGUGgAGgcaaGCUCa -3'
miRNA:   3'- -GGCuGGUGGGCGU---CUACgUCa---UGAGc -5'
18445 3' -55.2 NC_004681.1 + 28417 0.66 0.827708
Target:  5'- cCCGGCU-CCCGCGGAgauGGaGCUCGc -3'
miRNA:   3'- -GGCUGGuGGGCGUCUacgUCaUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.