miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18445 3' -55.2 NC_004681.1 + 29766 0.73 0.423578
Target:  5'- gCGACCugCUGcCAGGUGCAGccaGCUUGc -3'
miRNA:   3'- gGCUGGugGGC-GUCUACGUCa--UGAGC- -5'
18445 3' -55.2 NC_004681.1 + 31991 0.67 0.79109
Target:  5'- gCGGCCGCCgCG-AGGUaGUAGUACUgGc -3'
miRNA:   3'- gGCUGGUGG-GCgUCUA-CGUCAUGAgC- -5'
18445 3' -55.2 NC_004681.1 + 32365 0.69 0.626294
Target:  5'- aCCGAUCcgGCCCGCGGcgaGUGGaACUCGg -3'
miRNA:   3'- -GGCUGG--UGGGCGUCua-CGUCaUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 35501 1.11 0.001207
Target:  5'- uCCGACCACCCGCAGAUGCAGUACUCGg -3'
miRNA:   3'- -GGCUGGUGGGCGUCUACGUCAUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 37038 0.67 0.79109
Target:  5'- uCCGGCCAUcgccagggUCGguGAUGgGGUgGCUCa -3'
miRNA:   3'- -GGCUGGUG--------GGCguCUACgUCA-UGAGc -5'
18445 3' -55.2 NC_004681.1 + 38940 0.67 0.79109
Target:  5'- aCCGGCCACCgUGCAucUGCGGcugACcgCGg -3'
miRNA:   3'- -GGCUGGUGG-GCGUcuACGUCa--UGa-GC- -5'
18445 3' -55.2 NC_004681.1 + 40200 0.66 0.836402
Target:  5'- gCGACC-CCCG-GGGUGCAGUcACa-- -3'
miRNA:   3'- gGCUGGuGGGCgUCUACGUCA-UGagc -5'
18445 3' -55.2 NC_004681.1 + 45164 0.69 0.636968
Target:  5'- -aGACCGuCgCGCAGGUGCAGU-CUUu -3'
miRNA:   3'- ggCUGGU-GgGCGUCUACGUCAuGAGc -5'
18445 3' -55.2 NC_004681.1 + 46390 0.66 0.836402
Target:  5'- aUGGCUGCCCGCcguggacguAGAcGCAGUGgUCc -3'
miRNA:   3'- gGCUGGUGGGCG---------UCUaCGUCAUgAGc -5'
18445 3' -55.2 NC_004681.1 + 47618 0.7 0.594335
Target:  5'- aCGACgACCUGC-GAUGCAGUug-CGg -3'
miRNA:   3'- gGCUGgUGGGCGuCUACGUCAugaGC- -5'
18445 3' -55.2 NC_004681.1 + 49396 0.68 0.6985
Target:  5'- -aGACCGCCCGCcuugcgcgccucGGUGUAGaGCUCc -3'
miRNA:   3'- ggCUGGUGGGCGu-----------CUACGUCaUGAGc -5'
18445 3' -55.2 NC_004681.1 + 50973 0.7 0.573165
Target:  5'- -aGGCCGCCUGCu--UGUcggGGUACUCGg -3'
miRNA:   3'- ggCUGGUGGGCGucuACG---UCAUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 53342 0.7 0.583731
Target:  5'- uUGGCCGCCUgguGCAGGUGCc--ACUCGa -3'
miRNA:   3'- gGCUGGUGGG---CGUCUACGucaUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 60897 0.7 0.583731
Target:  5'- aCC--CCACCUGgGGGUGUAGUGCUgGa -3'
miRNA:   3'- -GGcuGGUGGGCgUCUACGUCAUGAgC- -5'
18445 3' -55.2 NC_004681.1 + 63679 0.71 0.531426
Target:  5'- aUGACCACCUGCAaguGGUGCGccgcggACUCGu -3'
miRNA:   3'- gGCUGGUGGGCGU---CUACGUca----UGAGC- -5'
18445 3' -55.2 NC_004681.1 + 64856 0.68 0.711041
Target:  5'- gCGACCucACCCaGCGG-UGaAGUGCUCGc -3'
miRNA:   3'- gGCUGG--UGGG-CGUCuACgUCAUGAGC- -5'
18445 3' -55.2 NC_004681.1 + 65166 0.67 0.781522
Target:  5'- gCGACCACCCgaGCGGGgaucgUGgAGUACg-- -3'
miRNA:   3'- gGCUGGUGGG--CGUCU-----ACgUCAUGagc -5'
18445 3' -55.2 NC_004681.1 + 66396 0.68 0.7317
Target:  5'- cCUGAuCCACUCGCAGGUcccCGGUgaGCUCa -3'
miRNA:   3'- -GGCU-GGUGGGCGUCUAc--GUCA--UGAGc -5'
18445 3' -55.2 NC_004681.1 + 66449 0.7 0.604969
Target:  5'- gCGACU-CCCGCGGcGUGCAGaaGCUCa -3'
miRNA:   3'- gGCUGGuGGGCGUC-UACGUCa-UGAGc -5'
18445 3' -55.2 NC_004681.1 + 67504 0.68 0.700597
Target:  5'- aCGGCCugCUGCGcGAgucGUaugAGUACUCGa -3'
miRNA:   3'- gGCUGGugGGCGU-CUa--CG---UCAUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.