Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 31991 | 0.67 | 0.79109 |
Target: 5'- gCGGCCGCCgCG-AGGUaGUAGUACUgGc -3' miRNA: 3'- gGCUGGUGG-GCgUCUA-CGUCAUGAgC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 29766 | 0.73 | 0.423578 |
Target: 5'- gCGACCugCUGcCAGGUGCAGccaGCUUGc -3' miRNA: 3'- gGCUGGugGGC-GUCUACGUCa--UGAGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 28417 | 0.66 | 0.827708 |
Target: 5'- cCCGGCU-CCCGCGGAgauGGaGCUCGc -3' miRNA: 3'- -GGCUGGuGGGCGUCUacgUCaUGAGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 27096 | 0.67 | 0.771808 |
Target: 5'- aCCGuCCACUCGCAcccGGUGgAGgcaaGCUCa -3' miRNA: 3'- -GGCuGGUGGGCGU---CUACgUCa---UGAGc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 25240 | 0.69 | 0.657231 |
Target: 5'- gCGGCCauggcGCCCGCGGcgGCGGUugggugcGCUUc -3' miRNA: 3'- gGCUGG-----UGGGCGUCuaCGUCA-------UGAGc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 24105 | 0.68 | 0.7317 |
Target: 5'- gCCGaACCACCCGaGGAUGUug-GCUgGg -3' miRNA: 3'- -GGC-UGGUGGGCgUCUACGucaUGAgC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 21536 | 0.67 | 0.771808 |
Target: 5'- uUGACCACCCGC----GCGGUGgcCUCa -3' miRNA: 3'- gGCUGGUGGGCGucuaCGUCAU--GAGc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 19917 | 0.67 | 0.771808 |
Target: 5'- gCCGGggUCACCgCGCAGcacGCGGUACUgGc -3' miRNA: 3'- -GGCU--GGUGG-GCGUCua-CGUCAUGAgC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 19704 | 0.7 | 0.583731 |
Target: 5'- aUCGACCACgCCGCAGcgcgccCAGaGCUCGu -3' miRNA: 3'- -GGCUGGUG-GGCGUCuac---GUCaUGAGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 16804 | 0.67 | 0.771808 |
Target: 5'- gCC-ACCGCCCGUcauacccgGGAacagGcCGGUGCUCGg -3' miRNA: 3'- -GGcUGGUGGGCG--------UCUa---C-GUCAUGAGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 16209 | 0.66 | 0.800503 |
Target: 5'- cCCGACaCAgCCGUGGcgGCuGUGCgCGc -3' miRNA: 3'- -GGCUG-GUgGGCGUCuaCGuCAUGaGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 14505 | 0.68 | 0.735789 |
Target: 5'- cUCGGCCGCCUGCuugcgcuuggcgucgGcGAUGCGGUuCUCc -3' miRNA: 3'- -GGCUGGUGGGCG---------------U-CUACGUCAuGAGc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 12974 | 0.68 | 0.69009 |
Target: 5'- gUGGUCACCCGCAGcgGCcguAGUGCcCGa -3' miRNA: 3'- gGCUGGUGGGCGUCuaCG---UCAUGaGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 8625 | 0.7 | 0.615625 |
Target: 5'- uCUGGCCGauggCCGCGGggGCGGU-CUCa -3' miRNA: 3'- -GGCUGGUg---GGCGUCuaCGUCAuGAGc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 6122 | 0.67 | 0.751983 |
Target: 5'- uCCGAUUGCCCGCAuccaguccgcGAUGgacaAGUACgUCGg -3' miRNA: 3'- -GGCUGGUGGGCGU----------CUACg---UCAUG-AGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 5715 | 0.69 | 0.636968 |
Target: 5'- aCCGG-CACCgGCcuGGAaGUAGUACUCGu -3' miRNA: 3'- -GGCUgGUGGgCG--UCUaCGUCAUGAGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 5206 | 0.7 | 0.594335 |
Target: 5'- gCCGAgCugUCGCcacAGAUGCAGgACUCc -3' miRNA: 3'- -GGCUgGugGGCG---UCUACGUCaUGAGc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 4784 | 0.7 | 0.594335 |
Target: 5'- gCGuCCACUCGaAGAUGCGGUGCa-- -3' miRNA: 3'- gGCuGGUGGGCgUCUACGUCAUGagc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 4205 | 0.67 | 0.771808 |
Target: 5'- uCC-ACCAUCCGCuGGAUGCGGaUGCcagCGu -3' miRNA: 3'- -GGcUGGUGGGCG-UCUACGUC-AUGa--GC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 2119 | 0.7 | 0.615625 |
Target: 5'- aCUGGCCAccCCCGCuGAUGUGGUAaccCGg -3' miRNA: 3'- -GGCUGGU--GGGCGuCUACGUCAUga-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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