Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18445 | 3' | -55.2 | NC_004681.1 | + | 50973 | 0.7 | 0.573165 |
Target: 5'- -aGGCCGCCUGCu--UGUcggGGUACUCGg -3' miRNA: 3'- ggCUGGUGGGCGucuACG---UCAUGAGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 807 | 0.66 | 0.800503 |
Target: 5'- cCCGGCaggcagACCuCGCAuggccccucGAUGUGGUGCUCa -3' miRNA: 3'- -GGCUGg-----UGG-GCGU---------CUACGUCAUGAGc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 16209 | 0.66 | 0.800503 |
Target: 5'- cCCGACaCAgCCGUGGcgGCuGUGCgCGc -3' miRNA: 3'- -GGCUG-GUgGGCGUCuaCGuCAUGaGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 46390 | 0.66 | 0.836402 |
Target: 5'- aUGGCUGCCCGCcguggacguAGAcGCAGUGgUCc -3' miRNA: 3'- gGCUGGUGGGCG---------UCUaCGUCAUgAGc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 8625 | 0.7 | 0.615625 |
Target: 5'- uCUGGCCGauggCCGCGGggGCGGU-CUCa -3' miRNA: 3'- -GGCUGGUg---GGCGUCuaCGUCAuGAGc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 5715 | 0.69 | 0.636968 |
Target: 5'- aCCGG-CACCgGCcuGGAaGUAGUACUCGu -3' miRNA: 3'- -GGCUgGUGGgCG--UCUaCGUCAUGAGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 12974 | 0.68 | 0.69009 |
Target: 5'- gUGGUCACCCGCAGcgGCcguAGUGCcCGa -3' miRNA: 3'- gGCUGGUGGGCGUCuaCG---UCAUGaGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 49396 | 0.68 | 0.6985 |
Target: 5'- -aGACCGCCCGCcuugcgcgccucGGUGUAGaGCUCc -3' miRNA: 3'- ggCUGGUGGGCGu-----------CUACGUCaUGAGc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 2112 | 0.67 | 0.741894 |
Target: 5'- aCGACCACCUGgccgcggcCGGAUG-GGUGCUgGg -3' miRNA: 3'- gGCUGGUGGGC--------GUCUACgUCAUGAgC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 19917 | 0.67 | 0.771808 |
Target: 5'- gCCGGggUCACCgCGCAGcacGCGGUACUgGc -3' miRNA: 3'- -GGCU--GGUGG-GCGUCua-CGUCAUGAgC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 14505 | 0.68 | 0.735789 |
Target: 5'- cUCGGCCGCCUGCuugcgcuuggcgucgGcGAUGCGGUuCUCc -3' miRNA: 3'- -GGCUGGUGGGCG---------------U-CUACGUCAuGAGc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 53342 | 0.7 | 0.583731 |
Target: 5'- uUGGCCGCCUgguGCAGGUGCc--ACUCGa -3' miRNA: 3'- gGCUGGUGGG---CGUCUACGucaUGAGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 65166 | 0.67 | 0.781522 |
Target: 5'- gCGACCACCCgaGCGGGgaucgUGgAGUACg-- -3' miRNA: 3'- gGCUGGUGGG--CGUCU-----ACgUCAUGagc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 19704 | 0.7 | 0.583731 |
Target: 5'- aUCGACCACgCCGCAGcgcgccCAGaGCUCGu -3' miRNA: 3'- -GGCUGGUG-GGCGUCuac---GUCaUGAGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 24105 | 0.68 | 0.7317 |
Target: 5'- gCCGaACCACCCGaGGAUGUug-GCUgGg -3' miRNA: 3'- -GGC-UGGUGGGCgUCUACGucaUGAgC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 31991 | 0.67 | 0.79109 |
Target: 5'- gCGGCCGCCgCG-AGGUaGUAGUACUgGc -3' miRNA: 3'- gGCUGGUGG-GCgUCUA-CGUCAUGAgC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 40200 | 0.66 | 0.836402 |
Target: 5'- gCGACC-CCCG-GGGUGCAGUcACa-- -3' miRNA: 3'- gGCUGGuGGGCgUCUACGUCA-UGagc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 4784 | 0.7 | 0.594335 |
Target: 5'- gCGuCCACUCGaAGAUGCGGUGCa-- -3' miRNA: 3'- gGCuGGUGGGCgUCUACGUCAUGagc -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 74837 | 0.69 | 0.668929 |
Target: 5'- gCGGaggaCACCCGCggccGGAUGCuccAGUGCUUGc -3' miRNA: 3'- gGCUg---GUGGGCG----UCUACG---UCAUGAGC- -5' |
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18445 | 3' | -55.2 | NC_004681.1 | + | 16804 | 0.67 | 0.771808 |
Target: 5'- gCC-ACCGCCCGUcauacccgGGAacagGcCGGUGCUCGg -3' miRNA: 3'- -GGcUGGUGGGCG--------UCUa---C-GUCAUGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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