miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18446 3' -58.9 NC_004681.1 + 54671 0.67 0.561221
Target:  5'- cGGG-GGGCaGcUgGCUgAUGgUUCCCa -3'
miRNA:   3'- aCCCaCCCGcC-AgCGAgUACgAAGGG- -5'
18446 3' -58.9 NC_004681.1 + 25063 0.68 0.500373
Target:  5'- aGGGcggcgcGGGCGGcaccUCGCUCA-GCcUCCUc -3'
miRNA:   3'- aCCCa-----CCCGCC----AGCGAGUaCGaAGGG- -5'
18446 3' -58.9 NC_004681.1 + 25489 0.68 0.500373
Target:  5'- gUGGGacUGGGuUGGUCGCUCA-GCggggacgCCg -3'
miRNA:   3'- -ACCC--ACCC-GCCAGCGAGUaCGaa-----GGg -5'
18446 3' -58.9 NC_004681.1 + 36020 0.68 0.480727
Target:  5'- ---cUGGGUaccuucaccgGGUCGCUCAcGCUUCCUc -3'
miRNA:   3'- acccACCCG----------CCAGCGAGUaCGAAGGG- -5'
18446 3' -58.9 NC_004681.1 + 46939 0.69 0.451987
Target:  5'- cGGGgugccgGGGCGGUUGCcgCGggGCUgcgUCUCg -3'
miRNA:   3'- aCCCa-----CCCGCCAGCGa-GUa-CGA---AGGG- -5'
18446 3' -58.9 NC_004681.1 + 64776 0.69 0.442617
Target:  5'- gGcGGUGGGCauuccGGUCGuCUCGccccacgagcUGCaUCCCg -3'
miRNA:   3'- aC-CCACCCG-----CCAGC-GAGU----------ACGaAGGG- -5'
18446 3' -58.9 NC_004681.1 + 36427 0.7 0.388815
Target:  5'- cGGGUuaccgGGUCGCUCAUcGCUUCCUc -3'
miRNA:   3'- aCCCAcccg-CCAGCGAGUA-CGAAGGG- -5'
18446 3' -58.9 NC_004681.1 + 36369 0.7 0.355413
Target:  5'- cGGGUGGGUGG-CGCac-UGCgaagaccUCCCa -3'
miRNA:   3'- aCCCACCCGCCaGCGaguACGa------AGGG- -5'
18446 3' -58.9 NC_004681.1 + 62470 0.71 0.339486
Target:  5'- cGGGaaUGGGC--UCGCUCAUGCgaUCCg -3'
miRNA:   3'- aCCC--ACCCGccAGCGAGUACGaaGGG- -5'
18446 3' -58.9 NC_004681.1 + 46069 0.71 0.309206
Target:  5'- cGGGUGgagaGGCaGUCGCUCAuuUGUUUCUUg -3'
miRNA:   3'- aCCCAC----CCGcCAGCGAGU--ACGAAGGG- -5'
18446 3' -58.9 NC_004681.1 + 46007 0.78 0.108227
Target:  5'- -cGGUGGGCGGUC-CUCGUGCaUUaCCCc -3'
miRNA:   3'- acCCACCCGCCAGcGAGUACG-AA-GGG- -5'
18446 3' -58.9 NC_004681.1 + 35848 1.11 0.000515
Target:  5'- aUGGGUGGGCGGUCGCUCAUGCUUCCCc -3'
miRNA:   3'- -ACCCACCCGCCAGCGAGUACGAAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.