Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18446 | 3' | -58.9 | NC_004681.1 | + | 54671 | 0.67 | 0.561221 |
Target: 5'- cGGG-GGGCaGcUgGCUgAUGgUUCCCa -3' miRNA: 3'- aCCCaCCCGcC-AgCGAgUACgAAGGG- -5' |
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18446 | 3' | -58.9 | NC_004681.1 | + | 25063 | 0.68 | 0.500373 |
Target: 5'- aGGGcggcgcGGGCGGcaccUCGCUCA-GCcUCCUc -3' miRNA: 3'- aCCCa-----CCCGCC----AGCGAGUaCGaAGGG- -5' |
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18446 | 3' | -58.9 | NC_004681.1 | + | 25489 | 0.68 | 0.500373 |
Target: 5'- gUGGGacUGGGuUGGUCGCUCA-GCggggacgCCg -3' miRNA: 3'- -ACCC--ACCC-GCCAGCGAGUaCGaa-----GGg -5' |
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18446 | 3' | -58.9 | NC_004681.1 | + | 36020 | 0.68 | 0.480727 |
Target: 5'- ---cUGGGUaccuucaccgGGUCGCUCAcGCUUCCUc -3' miRNA: 3'- acccACCCG----------CCAGCGAGUaCGAAGGG- -5' |
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18446 | 3' | -58.9 | NC_004681.1 | + | 64776 | 0.69 | 0.442617 |
Target: 5'- gGcGGUGGGCauuccGGUCGuCUCGccccacgagcUGCaUCCCg -3' miRNA: 3'- aC-CCACCCG-----CCAGC-GAGU----------ACGaAGGG- -5' |
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18446 | 3' | -58.9 | NC_004681.1 | + | 46939 | 0.69 | 0.451987 |
Target: 5'- cGGGgugccgGGGCGGUUGCcgCGggGCUgcgUCUCg -3' miRNA: 3'- aCCCa-----CCCGCCAGCGa-GUa-CGA---AGGG- -5' |
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18446 | 3' | -58.9 | NC_004681.1 | + | 36427 | 0.7 | 0.388815 |
Target: 5'- cGGGUuaccgGGUCGCUCAUcGCUUCCUc -3' miRNA: 3'- aCCCAcccg-CCAGCGAGUA-CGAAGGG- -5' |
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18446 | 3' | -58.9 | NC_004681.1 | + | 36369 | 0.7 | 0.355413 |
Target: 5'- cGGGUGGGUGG-CGCac-UGCgaagaccUCCCa -3' miRNA: 3'- aCCCACCCGCCaGCGaguACGa------AGGG- -5' |
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18446 | 3' | -58.9 | NC_004681.1 | + | 46069 | 0.71 | 0.309206 |
Target: 5'- cGGGUGgagaGGCaGUCGCUCAuuUGUUUCUUg -3' miRNA: 3'- aCCCAC----CCGcCAGCGAGU--ACGAAGGG- -5' |
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18446 | 3' | -58.9 | NC_004681.1 | + | 62470 | 0.71 | 0.339486 |
Target: 5'- cGGGaaUGGGC--UCGCUCAUGCgaUCCg -3' miRNA: 3'- aCCC--ACCCGccAGCGAGUACGaaGGG- -5' |
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18446 | 3' | -58.9 | NC_004681.1 | + | 46007 | 0.78 | 0.108227 |
Target: 5'- -cGGUGGGCGGUC-CUCGUGCaUUaCCCc -3' miRNA: 3'- acCCACCCGCCAGcGAGUACG-AA-GGG- -5' |
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18446 | 3' | -58.9 | NC_004681.1 | + | 35848 | 1.11 | 0.000515 |
Target: 5'- aUGGGUGGGCGGUCGCUCAUGCUUCCCc -3' miRNA: 3'- -ACCCACCCGCCAGCGAGUACGAAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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