miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18446 5' -58.2 NC_004681.1 + 46719 0.66 0.650994
Target:  5'- gUGGGcGUGUGCgGGGCgggGUCCUCGGc -3'
miRNA:   3'- gACCC-UACGUG-CCCGaggUAGGAGCU- -5'
18446 5' -58.2 NC_004681.1 + 851 0.66 0.625616
Target:  5'- aUGGGcgGCAgggcCGGGUaggccgucaccagUCGUCCUCGAu -3'
miRNA:   3'- gACCCuaCGU----GCCCGa------------GGUAGGAGCU- -5'
18446 5' -58.2 NC_004681.1 + 47839 0.67 0.598161
Target:  5'- uCUGGccagugaAUGCACuGGCgaugUCGUCCUCGAu -3'
miRNA:   3'- -GACCc------UACGUGcCCGa---GGUAGGAGCU- -5'
18446 5' -58.2 NC_004681.1 + 47150 0.67 0.566714
Target:  5'- -cGGGGUGCGCGcucGUgcaCAUCCUCGu -3'
miRNA:   3'- gaCCCUACGUGCc--CGag-GUAGGAGCu -5'
18446 5' -58.2 NC_004681.1 + 61089 0.68 0.535706
Target:  5'- gUGGGAUGUAguCGGGUUC-GUUUUCGAu -3'
miRNA:   3'- gACCCUACGU--GCCCGAGgUAGGAGCU- -5'
18446 5' -58.2 NC_004681.1 + 343 0.68 0.525499
Target:  5'- -aGGGcUGCACcgucauGGGCgCCAUCCgCGAg -3'
miRNA:   3'- gaCCCuACGUG------CCCGaGGUAGGaGCU- -5'
18446 5' -58.2 NC_004681.1 + 22013 0.69 0.446949
Target:  5'- aUGG--UGUACGGGUagCCAUUCUCGAa -3'
miRNA:   3'- gACCcuACGUGCCCGa-GGUAGGAGCU- -5'
18446 5' -58.2 NC_004681.1 + 28831 0.71 0.350597
Target:  5'- aCUGGcaggcgcagGCACGGGCUCCAcggagaccUUCUCGGu -3'
miRNA:   3'- -GACCcua------CGUGCCCGAGGU--------AGGAGCU- -5'
18446 5' -58.2 NC_004681.1 + 25063 0.73 0.286182
Target:  5'- -aGGGcgGCGCGGGCggcaccucgcucagCC-UCCUCGGc -3'
miRNA:   3'- gaCCCuaCGUGCCCGa-------------GGuAGGAGCU- -5'
18446 5' -58.2 NC_004681.1 + 65495 0.74 0.238537
Target:  5'- uCUGGGuGUGCGCGGGCaCCGgaucgggauacUUCUCGAg -3'
miRNA:   3'- -GACCC-UACGUGCCCGaGGU-----------AGGAGCU- -5'
18446 5' -58.2 NC_004681.1 + 35884 1.09 0.00075
Target:  5'- aCUGGGAUGCACGGGCUCCAUCCUCGAa -3'
miRNA:   3'- -GACCCUACGUGCCCGAGGUAGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.