Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18446 | 5' | -58.2 | NC_004681.1 | + | 35884 | 1.09 | 0.00075 |
Target: 5'- aCUGGGAUGCACGGGCUCCAUCCUCGAa -3' miRNA: 3'- -GACCCUACGUGCCCGAGGUAGGAGCU- -5' |
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18446 | 5' | -58.2 | NC_004681.1 | + | 25063 | 0.73 | 0.286182 |
Target: 5'- -aGGGcgGCGCGGGCggcaccucgcucagCC-UCCUCGGc -3' miRNA: 3'- gaCCCuaCGUGCCCGa-------------GGuAGGAGCU- -5' |
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18446 | 5' | -58.2 | NC_004681.1 | + | 28831 | 0.71 | 0.350597 |
Target: 5'- aCUGGcaggcgcagGCACGGGCUCCAcggagaccUUCUCGGu -3' miRNA: 3'- -GACCcua------CGUGCCCGAGGU--------AGGAGCU- -5' |
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18446 | 5' | -58.2 | NC_004681.1 | + | 343 | 0.68 | 0.525499 |
Target: 5'- -aGGGcUGCACcgucauGGGCgCCAUCCgCGAg -3' miRNA: 3'- gaCCCuACGUG------CCCGaGGUAGGaGCU- -5' |
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18446 | 5' | -58.2 | NC_004681.1 | + | 851 | 0.66 | 0.625616 |
Target: 5'- aUGGGcgGCAgggcCGGGUaggccgucaccagUCGUCCUCGAu -3' miRNA: 3'- gACCCuaCGU----GCCCGa------------GGUAGGAGCU- -5' |
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18446 | 5' | -58.2 | NC_004681.1 | + | 47839 | 0.67 | 0.598161 |
Target: 5'- uCUGGccagugaAUGCACuGGCgaugUCGUCCUCGAu -3' miRNA: 3'- -GACCc------UACGUGcCCGa---GGUAGGAGCU- -5' |
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18446 | 5' | -58.2 | NC_004681.1 | + | 47150 | 0.67 | 0.566714 |
Target: 5'- -cGGGGUGCGCGcucGUgcaCAUCCUCGu -3' miRNA: 3'- gaCCCUACGUGCc--CGag-GUAGGAGCu -5' |
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18446 | 5' | -58.2 | NC_004681.1 | + | 61089 | 0.68 | 0.535706 |
Target: 5'- gUGGGAUGUAguCGGGUUC-GUUUUCGAu -3' miRNA: 3'- gACCCUACGU--GCCCGAGgUAGGAGCU- -5' |
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18446 | 5' | -58.2 | NC_004681.1 | + | 22013 | 0.69 | 0.446949 |
Target: 5'- aUGG--UGUACGGGUagCCAUUCUCGAa -3' miRNA: 3'- gACCcuACGUGCCCGa-GGUAGGAGCU- -5' |
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18446 | 5' | -58.2 | NC_004681.1 | + | 65495 | 0.74 | 0.238537 |
Target: 5'- uCUGGGuGUGCGCGGGCaCCGgaucgggauacUUCUCGAg -3' miRNA: 3'- -GACCC-UACGUGCCCGaGGU-----------AGGAGCU- -5' |
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18446 | 5' | -58.2 | NC_004681.1 | + | 46719 | 0.66 | 0.650994 |
Target: 5'- gUGGGcGUGUGCgGGGCgggGUCCUCGGc -3' miRNA: 3'- gACCC-UACGUG-CCCGaggUAGGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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