miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18447 3' -59.1 NC_004681.1 + 67760 0.65 0.60956
Target:  5'- uGCGGCgGUacuUCAaugccuaGCCUCGGCCGuagccuccacCCGGg -3'
miRNA:   3'- -CGUCGgCG---AGU-------UGGAGCCGGU----------GGUCa -5'
18447 3' -59.1 NC_004681.1 + 62613 0.66 0.600073
Target:  5'- gGCGGCUGC-CAgggugcccaugGCCUgGGCCAugaUCAGg -3'
miRNA:   3'- -CGUCGGCGaGU-----------UGGAgCCGGU---GGUCa -5'
18447 3' -59.1 NC_004681.1 + 14424 0.66 0.600073
Target:  5'- gGCGcGCaGCUCAuuggcccgcGCCUCGGCgACCuGa -3'
miRNA:   3'- -CGU-CGgCGAGU---------UGGAGCCGgUGGuCa -5'
18447 3' -59.1 NC_004681.1 + 30042 0.66 0.600073
Target:  5'- --cGCCGCcgCGGCCaUCGGCC-UCGGa -3'
miRNA:   3'- cguCGGCGa-GUUGG-AGCCGGuGGUCa -5'
18447 3' -59.1 NC_004681.1 + 61741 0.66 0.600073
Target:  5'- -aGGCCGC----CCUCGcgcGCCACCAGa -3'
miRNA:   3'- cgUCGGCGaguuGGAGC---CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 70850 0.66 0.600073
Target:  5'- aGCGGCCGCagCAugcCCUCaGCCAUCc-- -3'
miRNA:   3'- -CGUCGGCGa-GUu--GGAGcCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 9504 0.66 0.600073
Target:  5'- uGCGcGCCGaagagcGCCUCGGCCuGCUGGUg -3'
miRNA:   3'- -CGU-CGGCgagu--UGGAGCCGG-UGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 14572 0.66 0.589555
Target:  5'- aCGGCCGCagUCGcCUUCGG-CACCGGc -3'
miRNA:   3'- cGUCGGCG--AGUuGGAGCCgGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 18479 0.66 0.589555
Target:  5'- cGCGGCCGC-C-GCCU-GGCCuGCCAu- -3'
miRNA:   3'- -CGUCGGCGaGuUGGAgCCGG-UGGUca -5'
18447 3' -59.1 NC_004681.1 + 16714 0.66 0.589555
Target:  5'- --cGCCGcCUCcAUCgCGGCCugCAGUu -3'
miRNA:   3'- cguCGGC-GAGuUGGaGCCGGugGUCA- -5'
18447 3' -59.1 NC_004681.1 + 1643 0.66 0.579071
Target:  5'- --cGCCGCcCAgcugaaggcugGCC-CGGUCACCAGg -3'
miRNA:   3'- cguCGGCGaGU-----------UGGaGCCGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 32231 0.66 0.579071
Target:  5'- cGCAGCgGCagcgCGGCCUCGuGUCuagcCCGGa -3'
miRNA:   3'- -CGUCGgCGa---GUUGGAGC-CGGu---GGUCa -5'
18447 3' -59.1 NC_004681.1 + 53058 0.66 0.568627
Target:  5'- --uGCCGC-CAGCCUgccaGGCCACguCGGUg -3'
miRNA:   3'- cguCGGCGaGUUGGAg---CCGGUG--GUCA- -5'
18447 3' -59.1 NC_004681.1 + 40563 0.66 0.558231
Target:  5'- uCGGCCGCggcguUCAAUgucaUCGGCCGCCu-- -3'
miRNA:   3'- cGUCGGCG-----AGUUGg---AGCCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 12818 0.66 0.558231
Target:  5'- uGCAGCaCGUaCGGCCaUUGGC-GCCGGUa -3'
miRNA:   3'- -CGUCG-GCGaGUUGG-AGCCGgUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 39040 0.67 0.547889
Target:  5'- uCAGCCGCagAugCaCGGUgGCCGGUu -3'
miRNA:   3'- cGUCGGCGagUugGaGCCGgUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 26915 0.67 0.547889
Target:  5'- -aAGCCGaagacgUCAGCgUUGGCCGCCgcGGUg -3'
miRNA:   3'- cgUCGGCg-----AGUUGgAGCCGGUGG--UCA- -5'
18447 3' -59.1 NC_004681.1 + 18295 0.67 0.547889
Target:  5'- cGCAGUC-CUCGACUggCGGUCAgCAGc -3'
miRNA:   3'- -CGUCGGcGAGUUGGa-GCCGGUgGUCa -5'
18447 3' -59.1 NC_004681.1 + 39211 0.67 0.545828
Target:  5'- gGCGGUCGCggaagguguuGCCcgcgcaggUGGCCACCAGg -3'
miRNA:   3'- -CGUCGGCGagu-------UGGa-------GCCGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 49668 0.67 0.541713
Target:  5'- uGCAGUCGUUgguGCCUCGGgCCugcccgcgggggaagGCCAGg -3'
miRNA:   3'- -CGUCGGCGAgu-UGGAGCC-GG---------------UGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.