Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18447 | 3' | -59.1 | NC_004681.1 | + | 62953 | 0.67 | 0.537609 |
Target: 5'- aGCGGUCGCggUCcuUCUCGGCgCGCuCGGUg -3' miRNA: 3'- -CGUCGGCG--AGuuGGAGCCG-GUG-GUCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 49668 | 0.67 | 0.541713 |
Target: 5'- uGCAGUCGUUgguGCCUCGGgCCugcccgcgggggaagGCCAGg -3' miRNA: 3'- -CGUCGGCGAgu-UGGAGCC-GG---------------UGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 39211 | 0.67 | 0.545828 |
Target: 5'- gGCGGUCGCggaagguguuGCCcgcgcaggUGGCCACCAGg -3' miRNA: 3'- -CGUCGGCGagu-------UGGa-------GCCGGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 39040 | 0.67 | 0.547889 |
Target: 5'- uCAGCCGCagAugCaCGGUgGCCGGUu -3' miRNA: 3'- cGUCGGCGagUugGaGCCGgUGGUCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 38318 | 0.67 | 0.517255 |
Target: 5'- cGCcGCCGCgggaCGuCUUCGGCCGCCc-- -3' miRNA: 3'- -CGuCGGCGa---GUuGGAGCCGGUGGuca -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 32787 | 0.67 | 0.527396 |
Target: 5'- cCAGCCGCgCGACgUCGGCgGgguacCCGGa -3' miRNA: 3'- cGUCGGCGaGUUGgAGCCGgU-----GGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 45402 | 0.67 | 0.516246 |
Target: 5'- gGCAGCggugaagCGCUCAgcaacuucgccGCCUCcauGGCCGCCcucGGUg -3' miRNA: 3'- -CGUCG-------GCGAGU-----------UGGAG---CCGGUGG---UCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 8844 | 0.67 | 0.517255 |
Target: 5'- -gAGCUGUUCAACUUCguccagGGCCGCCu-- -3' miRNA: 3'- cgUCGGCGAGUUGGAG------CCGGUGGuca -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 47442 | 0.67 | 0.537609 |
Target: 5'- gGUGGauGCUCAACCUCcacgaguGCCAUCAGg -3' miRNA: 3'- -CGUCggCGAGUUGGAGc------CGGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 18295 | 0.67 | 0.547889 |
Target: 5'- cGCAGUC-CUCGACUggCGGUCAgCAGc -3' miRNA: 3'- -CGUCGGcGAGUUGGa-GCCGGUgGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 66067 | 0.67 | 0.514229 |
Target: 5'- gGCAGCCuuCUCGGCCuUCGuGCCguagcggaugucauGCCAGa -3' miRNA: 3'- -CGUCGGc-GAGUUGG-AGC-CGG--------------UGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 26915 | 0.67 | 0.547889 |
Target: 5'- -aAGCCGaagacgUCAGCgUUGGCCGCCgcGGUg -3' miRNA: 3'- cgUCGGCg-----AGUUGgAGCCGGUGG--UCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 16421 | 0.67 | 0.537609 |
Target: 5'- -uGGCCuGCUCGGCUUccgucgaucCGGCCGCgGGg -3' miRNA: 3'- cgUCGG-CGAGUUGGA---------GCCGGUGgUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 24943 | 0.67 | 0.517255 |
Target: 5'- gGCGGCCGC-C-GCC-CGcGCCGCCGa- -3' miRNA: 3'- -CGUCGGCGaGuUGGaGC-CGGUGGUca -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 28241 | 0.68 | 0.448758 |
Target: 5'- uGCcGCCGCUCGAUC-CGccGCCGCCGu- -3' miRNA: 3'- -CGuCGGCGAGUUGGaGC--CGGUGGUca -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 28151 | 0.68 | 0.458246 |
Target: 5'- --uGCCGC-CAccGCCUCGaCCGCCAGc -3' miRNA: 3'- cguCGGCGaGU--UGGAGCcGGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 58628 | 0.68 | 0.487329 |
Target: 5'- gGCAugauuGUCGCg----CUCGGCCACCAGUu -3' miRNA: 3'- -CGU-----CGGCGaguugGAGCCGGUGGUCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 25074 | 0.68 | 0.46207 |
Target: 5'- gGCGGCaccuCGCUCAGCCUCcucggcaccucgguuGGCCGCgGa- -3' miRNA: 3'- -CGUCG----GCGAGUUGGAG---------------CCGGUGgUca -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 35855 | 0.68 | 0.486345 |
Target: 5'- gGCGGUCGCUCAugCUuccccucCGGCUgACUGGg -3' miRNA: 3'- -CGUCGGCGAGUugGA-------GCCGG-UGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 70472 | 0.68 | 0.477535 |
Target: 5'- uGCGGCCGCgcguagacgUCAGCCguaUGGUCACUgaGGUu -3' miRNA: 3'- -CGUCGGCG---------AGUUGGa--GCCGGUGG--UCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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