miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18447 3' -59.1 NC_004681.1 + 16153 0.69 0.403024
Target:  5'- gGCGGCCaucccgucGCUCAucgcgcuguCCUCGGCCAUCu-- -3'
miRNA:   3'- -CGUCGG--------CGAGUu--------GGAGCCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 23421 0.69 0.430115
Target:  5'- --cGCUGUucaccgUCGACCUCGGCCACUcccgcAGUu -3'
miRNA:   3'- cguCGGCG------AGUUGGAGCCGGUGG-----UCA- -5'
18447 3' -59.1 NC_004681.1 + 23875 0.68 0.43938
Target:  5'- uGCGGUgGCUU--CCUCGGUCACCu-- -3'
miRNA:   3'- -CGUCGgCGAGuuGGAGCCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 70472 0.68 0.477535
Target:  5'- uGCGGCCGCgcguagacgUCAGCCguaUGGUCACUgaGGUu -3'
miRNA:   3'- -CGUCGGCG---------AGUUGGa--GCCGGUGG--UCA- -5'
18447 3' -59.1 NC_004681.1 + 35855 0.68 0.486345
Target:  5'- gGCGGUCGCUCAugCUuccccucCGGCUgACUGGg -3'
miRNA:   3'- -CGUCGGCGAGUugGA-------GCCGG-UGGUCa -5'
18447 3' -59.1 NC_004681.1 + 35362 0.68 0.487329
Target:  5'- gGCGGCC--UCAuCCUCGcugcguccaaGCCACCGGUg -3'
miRNA:   3'- -CGUCGGcgAGUuGGAGC----------CGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 58628 0.68 0.487329
Target:  5'- gGCAugauuGUCGCg----CUCGGCCACCAGUu -3'
miRNA:   3'- -CGU-----CGGCGaguugGAGCCGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 25074 0.68 0.46207
Target:  5'- gGCGGCaccuCGCUCAGCCUCcucggcaccucgguuGGCCGCgGa- -3'
miRNA:   3'- -CGUCG----GCGAGUUGGAG---------------CCGGUGgUca -5'
18447 3' -59.1 NC_004681.1 + 19781 0.68 0.43938
Target:  5'- cGCugguguGCgGCUCcGCUaagaaCGGCCGCCAGUa -3'
miRNA:   3'- -CGu-----CGgCGAGuUGGa----GCCGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 30249 0.68 0.446873
Target:  5'- cGCGGCCGCgccgccugagccCGACCcacaGGCCGCCuuGUa -3'
miRNA:   3'- -CGUCGGCGa-----------GUUGGag--CCGGUGGu-CA- -5'
18447 3' -59.1 NC_004681.1 + 29726 0.68 0.487329
Target:  5'- uCGGUCGUggUCGACgUCGaGCCAUCAGa -3'
miRNA:   3'- cGUCGGCG--AGUUGgAGC-CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 33846 0.68 0.487329
Target:  5'- cCAGCCGCg----CUCGGCCGcuuCCAGUu -3'
miRNA:   3'- cGUCGGCGaguugGAGCCGGU---GGUCA- -5'
18447 3' -59.1 NC_004681.1 + 28151 0.68 0.458246
Target:  5'- --uGCCGC-CAccGCCUCGaCCGCCAGc -3'
miRNA:   3'- cguCGGCGaGU--UGGAGCcGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 28241 0.68 0.448758
Target:  5'- uGCcGCCGCUCGAUC-CGccGCCGCCGu- -3'
miRNA:   3'- -CGuCGGCGAGUUGGaGC--CGGUGGUca -5'
18447 3' -59.1 NC_004681.1 + 55974 0.68 0.477535
Target:  5'- gGguGCCG---GugCUCGGCUGCCAGg -3'
miRNA:   3'- -CguCGGCgagUugGAGCCGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 45402 0.67 0.516246
Target:  5'- gGCAGCggugaagCGCUCAgcaacuucgccGCCUCcauGGCCGCCcucGGUg -3'
miRNA:   3'- -CGUCG-------GCGAGU-----------UGGAG---CCGGUGG---UCA- -5'
18447 3' -59.1 NC_004681.1 + 8844 0.67 0.517255
Target:  5'- -gAGCUGUUCAACUUCguccagGGCCGCCu-- -3'
miRNA:   3'- cgUCGGCGAGUUGGAG------CCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 47442 0.67 0.537609
Target:  5'- gGUGGauGCUCAACCUCcacgaguGCCAUCAGg -3'
miRNA:   3'- -CGUCggCGAGUUGGAGc------CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 39609 0.67 0.496224
Target:  5'- cCAGcCCGCUUGggccaugagucccGCCUCGcuGCCACCGGc -3'
miRNA:   3'- cGUC-GGCGAGU-------------UGGAGC--CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 18295 0.67 0.547889
Target:  5'- cGCAGUC-CUCGACUggCGGUCAgCAGc -3'
miRNA:   3'- -CGUCGGcGAGUUGGa-GCCGGUgGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.