Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18447 | 3' | -59.1 | NC_004681.1 | + | 57397 | 0.69 | 0.411935 |
Target: 5'- aCAGCCcCUUAccACCcuucUCGGCUACCAGg -3' miRNA: 3'- cGUCGGcGAGU--UGG----AGCCGGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 23421 | 0.69 | 0.430115 |
Target: 5'- --cGCUGUucaccgUCGACCUCGGCCACUcccgcAGUu -3' miRNA: 3'- cguCGGCG------AGUUGGAGCCGGUGG-----UCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 23875 | 0.68 | 0.43938 |
Target: 5'- uGCGGUgGCUU--CCUCGGUCACCu-- -3' miRNA: 3'- -CGUCGgCGAGuuGGAGCCGGUGGuca -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 19781 | 0.68 | 0.43938 |
Target: 5'- cGCugguguGCgGCUCcGCUaagaaCGGCCGCCAGUa -3' miRNA: 3'- -CGu-----CGgCGAGuUGGa----GCCGGUGGUCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 30249 | 0.68 | 0.446873 |
Target: 5'- cGCGGCCGCgccgccugagccCGACCcacaGGCCGCCuuGUa -3' miRNA: 3'- -CGUCGGCGa-----------GUUGGag--CCGGUGGu-CA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 28241 | 0.68 | 0.448758 |
Target: 5'- uGCcGCCGCUCGAUC-CGccGCCGCCGu- -3' miRNA: 3'- -CGuCGGCGAGUUGGaGC--CGGUGGUca -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 28151 | 0.68 | 0.458246 |
Target: 5'- --uGCCGC-CAccGCCUCGaCCGCCAGc -3' miRNA: 3'- cguCGGCGaGU--UGGAGCcGGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 25074 | 0.68 | 0.46207 |
Target: 5'- gGCGGCaccuCGCUCAGCCUCcucggcaccucgguuGGCCGCgGa- -3' miRNA: 3'- -CGUCG----GCGAGUUGGAG---------------CCGGUGgUca -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 55974 | 0.68 | 0.477535 |
Target: 5'- gGguGCCG---GugCUCGGCUGCCAGg -3' miRNA: 3'- -CguCGGCgagUugGAGCCGGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 70472 | 0.68 | 0.477535 |
Target: 5'- uGCGGCCGCgcguagacgUCAGCCguaUGGUCACUgaGGUu -3' miRNA: 3'- -CGUCGGCG---------AGUUGGa--GCCGGUGG--UCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 35855 | 0.68 | 0.486345 |
Target: 5'- gGCGGUCGCUCAugCUuccccucCGGCUgACUGGg -3' miRNA: 3'- -CGUCGGCGAGUugGA-------GCCGG-UGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 35362 | 0.68 | 0.487329 |
Target: 5'- gGCGGCC--UCAuCCUCGcugcguccaaGCCACCGGUg -3' miRNA: 3'- -CGUCGGcgAGUuGGAGC----------CGGUGGUCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 29726 | 0.68 | 0.487329 |
Target: 5'- uCGGUCGUggUCGACgUCGaGCCAUCAGa -3' miRNA: 3'- cGUCGGCG--AGUUGgAGC-CGGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 33846 | 0.68 | 0.487329 |
Target: 5'- cCAGCCGCg----CUCGGCCGcuuCCAGUu -3' miRNA: 3'- cGUCGGCGaguugGAGCCGGU---GGUCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 58628 | 0.68 | 0.487329 |
Target: 5'- gGCAugauuGUCGCg----CUCGGCCACCAGUu -3' miRNA: 3'- -CGU-----CGGCGaguugGAGCCGGUGGUCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 39609 | 0.67 | 0.496224 |
Target: 5'- cCAGcCCGCUUGggccaugagucccGCCUCGcuGCCACCGGc -3' miRNA: 3'- cGUC-GGCGAGU-------------UGGAGC--CGGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 52233 | 0.67 | 0.497217 |
Target: 5'- uGCAGCUGCUUGGCCgccaccuugaGGCUGCgGGa -3' miRNA: 3'- -CGUCGGCGAGUUGGag--------CCGGUGgUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 7434 | 0.67 | 0.497217 |
Target: 5'- cGCGGCgGCggggUCAGCCcCGGgUGCCGGg -3' miRNA: 3'- -CGUCGgCG----AGUUGGaGCCgGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 2126 | 0.67 | 0.507194 |
Target: 5'- uGCGGCCGCccuccaCGACCaccUGGCCgcgGCCGGa -3' miRNA: 3'- -CGUCGGCGa-----GUUGGa--GCCGG---UGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 66067 | 0.67 | 0.514229 |
Target: 5'- gGCAGCCuuCUCGGCCuUCGuGCCguagcggaugucauGCCAGa -3' miRNA: 3'- -CGUCGGc-GAGUUGG-AGC-CGG--------------UGGUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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