miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18447 3' -59.1 NC_004681.1 + 1643 0.66 0.579071
Target:  5'- --cGCCGCcCAgcugaaggcugGCC-CGGUCACCAGg -3'
miRNA:   3'- cguCGGCGaGU-----------UGGaGCCGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 2126 0.67 0.507194
Target:  5'- uGCGGCCGCccuccaCGACCaccUGGCCgcgGCCGGa -3'
miRNA:   3'- -CGUCGGCGa-----GUUGGa--GCCGG---UGGUCa -5'
18447 3' -59.1 NC_004681.1 + 3342 0.71 0.320186
Target:  5'- aGCgAGCCaggaagaGCgCAGCCUCGGCCAggucCCGGUu -3'
miRNA:   3'- -CG-UCGG-------CGaGUUGGAGCCGGU----GGUCA- -5'
18447 3' -59.1 NC_004681.1 + 7263 0.7 0.344193
Target:  5'- cGCGGCCGUcC-ACCUCGG-CGCCgAGUg -3'
miRNA:   3'- -CGUCGGCGaGuUGGAGCCgGUGG-UCA- -5'
18447 3' -59.1 NC_004681.1 + 7434 0.67 0.497217
Target:  5'- cGCGGCgGCggggUCAGCCcCGGgUGCCGGg -3'
miRNA:   3'- -CGUCGgCG----AGUUGGaGCCgGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 8844 0.67 0.517255
Target:  5'- -gAGCUGUUCAACUUCguccagGGCCGCCu-- -3'
miRNA:   3'- cgUCGGCGAGUUGGAG------CCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 8985 0.73 0.233871
Target:  5'- --cGCUGUUCGgcgccACCUCGGCCACCGu- -3'
miRNA:   3'- cguCGGCGAGU-----UGGAGCCGGUGGUca -5'
18447 3' -59.1 NC_004681.1 + 9504 0.66 0.600073
Target:  5'- uGCGcGCCGaagagcGCCUCGGCCuGCUGGUg -3'
miRNA:   3'- -CGU-CGGCgagu--UGGAGCCGG-UGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 9925 0.73 0.236226
Target:  5'- uGCGGCCGCUgcggaCAACCUUGGUCucgaccucguccucgACCAGc -3'
miRNA:   3'- -CGUCGGCGA-----GUUGGAGCCGG---------------UGGUCa -5'
18447 3' -59.1 NC_004681.1 + 10178 0.7 0.344193
Target:  5'- gGUAGCC-CUCAACCUUGGagauuucgaCUACCGGa -3'
miRNA:   3'- -CGUCGGcGAGUUGGAGCC---------GGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 12818 0.66 0.558231
Target:  5'- uGCAGCaCGUaCGGCCaUUGGC-GCCGGUa -3'
miRNA:   3'- -CGUCG-GCGaGUUGG-AGCCGgUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 14424 0.66 0.600073
Target:  5'- gGCGcGCaGCUCAuuggcccgcGCCUCGGCgACCuGa -3'
miRNA:   3'- -CGU-CGgCGAGU---------UGGAGCCGgUGGuCa -5'
18447 3' -59.1 NC_004681.1 + 14572 0.66 0.589555
Target:  5'- aCGGCCGCagUCGcCUUCGG-CACCGGc -3'
miRNA:   3'- cGUCGGCG--AGUuGGAGCCgGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 16001 0.69 0.406574
Target:  5'- cGCGGCCaCggCGAUCUucacggugacccacgCGGCCGCCAGg -3'
miRNA:   3'- -CGUCGGcGa-GUUGGA---------------GCCGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 16153 0.69 0.403024
Target:  5'- gGCGGCCaucccgucGCUCAucgcgcuguCCUCGGCCAUCu-- -3'
miRNA:   3'- -CGUCGG--------CGAGUu--------GGAGCCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 16421 0.67 0.537609
Target:  5'- -uGGCCuGCUCGGCUUccgucgaucCGGCCGCgGGg -3'
miRNA:   3'- cgUCGG-CGAGUUGGA---------GCCGGUGgUCa -5'
18447 3' -59.1 NC_004681.1 + 16714 0.66 0.589555
Target:  5'- --cGCCGcCUCcAUCgCGGCCugCAGUu -3'
miRNA:   3'- cguCGGC-GAGuUGGaGCCGGugGUCA- -5'
18447 3' -59.1 NC_004681.1 + 17907 0.69 0.385576
Target:  5'- cGCGGCCGCcgcgUUGAUgUCGGCCugCGu- -3'
miRNA:   3'- -CGUCGGCG----AGUUGgAGCCGGugGUca -5'
18447 3' -59.1 NC_004681.1 + 18295 0.67 0.547889
Target:  5'- cGCAGUC-CUCGACUggCGGUCAgCAGc -3'
miRNA:   3'- -CGUCGGcGAGUUGGa-GCCGGUgGUCa -5'
18447 3' -59.1 NC_004681.1 + 18479 0.66 0.589555
Target:  5'- cGCGGCCGC-C-GCCU-GGCCuGCCAu- -3'
miRNA:   3'- -CGUCGGCGaGuUGGAgCCGG-UGGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.