miRNA display CGI


Results 21 - 40 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18447 3' -59.1 NC_004681.1 + 19781 0.68 0.43938
Target:  5'- cGCugguguGCgGCUCcGCUaagaaCGGCCGCCAGUa -3'
miRNA:   3'- -CGu-----CGgCGAGuUGGa----GCCGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 23421 0.69 0.430115
Target:  5'- --cGCUGUucaccgUCGACCUCGGCCACUcccgcAGUu -3'
miRNA:   3'- cguCGGCG------AGUUGGAGCCGGUGG-----UCA- -5'
18447 3' -59.1 NC_004681.1 + 23875 0.68 0.43938
Target:  5'- uGCGGUgGCUU--CCUCGGUCACCu-- -3'
miRNA:   3'- -CGUCGgCGAGuuGGAGCCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 24943 0.67 0.517255
Target:  5'- gGCGGCCGC-C-GCC-CGcGCCGCCGa- -3'
miRNA:   3'- -CGUCGGCGaGuUGGaGC-CGGUGGUca -5'
18447 3' -59.1 NC_004681.1 + 25074 0.68 0.46207
Target:  5'- gGCGGCaccuCGCUCAGCCUCcucggcaccucgguuGGCCGCgGa- -3'
miRNA:   3'- -CGUCG----GCGAGUUGGAG---------------CCGGUGgUca -5'
18447 3' -59.1 NC_004681.1 + 26915 0.67 0.547889
Target:  5'- -aAGCCGaagacgUCAGCgUUGGCCGCCgcGGUg -3'
miRNA:   3'- cgUCGGCg-----AGUUGgAGCCGGUGG--UCA- -5'
18447 3' -59.1 NC_004681.1 + 27915 0.72 0.284841
Target:  5'- aGCGGCaCGCggGGCCUCGGCgGCaCGGc -3'
miRNA:   3'- -CGUCG-GCGagUUGGAGCCGgUG-GUCa -5'
18447 3' -59.1 NC_004681.1 + 28151 0.68 0.458246
Target:  5'- --uGCCGC-CAccGCCUCGaCCGCCAGc -3'
miRNA:   3'- cguCGGCGaGU--UGGAGCcGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 28241 0.68 0.448758
Target:  5'- uGCcGCCGCUCGAUC-CGccGCCGCCGu- -3'
miRNA:   3'- -CGuCGGCGAGUUGGaGC--CGGUGGUca -5'
18447 3' -59.1 NC_004681.1 + 29726 0.68 0.487329
Target:  5'- uCGGUCGUggUCGACgUCGaGCCAUCAGa -3'
miRNA:   3'- cGUCGGCG--AGUUGgAGC-CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 29798 0.71 0.328559
Target:  5'- cGCGGCCGgUCGACCUa---CGCCAGg -3'
miRNA:   3'- -CGUCGGCgAGUUGGAgccgGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 30042 0.66 0.600073
Target:  5'- --cGCCGCcgCGGCCaUCGGCC-UCGGa -3'
miRNA:   3'- cguCGGCGa-GUUGG-AGCCGGuGGUCa -5'
18447 3' -59.1 NC_004681.1 + 30249 0.68 0.446873
Target:  5'- cGCGGCCGCgccgccugagccCGACCcacaGGCCGCCuuGUa -3'
miRNA:   3'- -CGUCGGCGa-----------GUUGGag--CCGGUGGu-CA- -5'
18447 3' -59.1 NC_004681.1 + 32231 0.66 0.579071
Target:  5'- cGCAGCgGCagcgCGGCCUCGuGUCuagcCCGGa -3'
miRNA:   3'- -CGUCGgCGa---GUUGGAGC-CGGu---GGUCa -5'
18447 3' -59.1 NC_004681.1 + 32787 0.67 0.527396
Target:  5'- cCAGCCGCgCGACgUCGGCgGgguacCCGGa -3'
miRNA:   3'- cGUCGGCGaGUUGgAGCCGgU-----GGUCa -5'
18447 3' -59.1 NC_004681.1 + 33846 0.68 0.487329
Target:  5'- cCAGCCGCg----CUCGGCCGcuuCCAGUu -3'
miRNA:   3'- cGUCGGCGaguugGAGCCGGU---GGUCA- -5'
18447 3' -59.1 NC_004681.1 + 35362 0.68 0.487329
Target:  5'- gGCGGCC--UCAuCCUCGcugcguccaaGCCACCGGUg -3'
miRNA:   3'- -CGUCGGcgAGUuGGAGC----------CGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 35855 0.68 0.486345
Target:  5'- gGCGGUCGCUCAugCUuccccucCGGCUgACUGGg -3'
miRNA:   3'- -CGUCGGCGAGUugGA-------GCCGG-UGGUCa -5'
18447 3' -59.1 NC_004681.1 + 36196 1.08 0.000638
Target:  5'- cGCAGCCGCUCAACCUCGGCCACCAGUu -3'
miRNA:   3'- -CGUCGGCGAGUUGGAGCCGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 38318 0.67 0.517255
Target:  5'- cGCcGCCGCgggaCGuCUUCGGCCGCCc-- -3'
miRNA:   3'- -CGuCGGCGa---GUuGGAGCCGGUGGuca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.