miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18447 3' -59.1 NC_004681.1 + 39040 0.67 0.547889
Target:  5'- uCAGCCGCagAugCaCGGUgGCCGGUu -3'
miRNA:   3'- cGUCGGCGagUugGaGCCGgUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 39211 0.67 0.545828
Target:  5'- gGCGGUCGCggaagguguuGCCcgcgcaggUGGCCACCAGg -3'
miRNA:   3'- -CGUCGGCGagu-------UGGa-------GCCGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 39609 0.67 0.496224
Target:  5'- cCAGcCCGCUUGggccaugagucccGCCUCGcuGCCACCGGc -3'
miRNA:   3'- cGUC-GGCGAGU-------------UGGAGC--CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 40563 0.66 0.558231
Target:  5'- uCGGCCGCggcguUCAAUgucaUCGGCCGCCu-- -3'
miRNA:   3'- cGUCGGCG-----AGUUGg---AGCCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 45402 0.67 0.516246
Target:  5'- gGCAGCggugaagCGCUCAgcaacuucgccGCCUCcauGGCCGCCcucGGUg -3'
miRNA:   3'- -CGUCG-------GCGAGU-----------UGGAG---CCGGUGG---UCA- -5'
18447 3' -59.1 NC_004681.1 + 46059 0.69 0.394238
Target:  5'- gGCAGUCGCUCAuuuguuUCUUGGUugUACCGGa -3'
miRNA:   3'- -CGUCGGCGAGUu-----GGAGCCG--GUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 46450 0.72 0.252026
Target:  5'- cGCGGCCuGCUCcgguACCUCGGCCuggaGGUc -3'
miRNA:   3'- -CGUCGG-CGAGu---UGGAGCCGGugg-UCA- -5'
18447 3' -59.1 NC_004681.1 + 47442 0.67 0.537609
Target:  5'- gGUGGauGCUCAACCUCcacgaguGCCAUCAGg -3'
miRNA:   3'- -CGUCggCGAGUUGGAGc------CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 49668 0.67 0.541713
Target:  5'- uGCAGUCGUUgguGCCUCGGgCCugcccgcgggggaagGCCAGg -3'
miRNA:   3'- -CGUCGGCGAgu-UGGAGCC-GG---------------UGGUCa -5'
18447 3' -59.1 NC_004681.1 + 50407 0.71 0.32094
Target:  5'- gGguGCCcaugaGUUCAGCgUCGGCCGCgGGg -3'
miRNA:   3'- -CguCGG-----CGAGUUGgAGCCGGUGgUCa -5'
18447 3' -59.1 NC_004681.1 + 52233 0.67 0.497217
Target:  5'- uGCAGCUGCUUGGCCgccaccuugaGGCUGCgGGa -3'
miRNA:   3'- -CGUCGGCGAGUUGGag--------CCGGUGgUCa -5'
18447 3' -59.1 NC_004681.1 + 53058 0.66 0.568627
Target:  5'- --uGCCGC-CAGCCUgccaGGCCACguCGGUg -3'
miRNA:   3'- cguCGGCGaGUUGGAg---CCGGUG--GUCA- -5'
18447 3' -59.1 NC_004681.1 + 55889 0.73 0.233871
Target:  5'- aGCAGCCGCUCucGACCUauggcgaGGUCGuuguuCCAGUa -3'
miRNA:   3'- -CGUCGGCGAG--UUGGAg------CCGGU-----GGUCA- -5'
18447 3' -59.1 NC_004681.1 + 55974 0.68 0.477535
Target:  5'- gGguGCCG---GugCUCGGCUGCCAGg -3'
miRNA:   3'- -CguCGGCgagUugGAGCCGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 56325 0.71 0.327791
Target:  5'- uGCAGCuCGCUCGggucgacGCCgguccaGGCCACCGa- -3'
miRNA:   3'- -CGUCG-GCGAGU-------UGGag----CCGGUGGUca -5'
18447 3' -59.1 NC_004681.1 + 57397 0.69 0.411935
Target:  5'- aCAGCCcCUUAccACCcuucUCGGCUACCAGg -3'
miRNA:   3'- cGUCGGcGAGU--UGG----AGCCGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 57681 0.71 0.313455
Target:  5'- cGCAG-CGCUCGAcgcaauCCUCGGCCAacccgaCAGg -3'
miRNA:   3'- -CGUCgGCGAGUU------GGAGCCGGUg-----GUCa -5'
18447 3' -59.1 NC_004681.1 + 58628 0.68 0.487329
Target:  5'- gGCAugauuGUCGCg----CUCGGCCACCAGUu -3'
miRNA:   3'- -CGU-----CGGCGaguugGAGCCGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 61741 0.66 0.600073
Target:  5'- -aGGCCGC----CCUCGcgcGCCACCAGa -3'
miRNA:   3'- cgUCGGCGaguuGGAGC---CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 62529 0.7 0.360356
Target:  5'- gGCAGCCGCcuccgacaccgUCuACCUCGGUguCAuCCAGg -3'
miRNA:   3'- -CGUCGGCG-----------AGuUGGAGCCG--GU-GGUCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.