miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18447 3' -59.1 NC_004681.1 + 49668 0.67 0.541713
Target:  5'- uGCAGUCGUUgguGCCUCGGgCCugcccgcgggggaagGCCAGg -3'
miRNA:   3'- -CGUCGGCGAgu-UGGAGCC-GG---------------UGGUCa -5'
18447 3' -59.1 NC_004681.1 + 47442 0.67 0.537609
Target:  5'- gGUGGauGCUCAACCUCcacgaguGCCAUCAGg -3'
miRNA:   3'- -CGUCggCGAGUUGGAGc------CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 46450 0.72 0.252026
Target:  5'- cGCGGCCuGCUCcgguACCUCGGCCuggaGGUc -3'
miRNA:   3'- -CGUCGG-CGAGu---UGGAGCCGGugg-UCA- -5'
18447 3' -59.1 NC_004681.1 + 46059 0.69 0.394238
Target:  5'- gGCAGUCGCUCAuuuguuUCUUGGUugUACCGGa -3'
miRNA:   3'- -CGUCGGCGAGUu-----GGAGCCG--GUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 45402 0.67 0.516246
Target:  5'- gGCAGCggugaagCGCUCAgcaacuucgccGCCUCcauGGCCGCCcucGGUg -3'
miRNA:   3'- -CGUCG-------GCGAGU-----------UGGAG---CCGGUGG---UCA- -5'
18447 3' -59.1 NC_004681.1 + 40563 0.66 0.558231
Target:  5'- uCGGCCGCggcguUCAAUgucaUCGGCCGCCu-- -3'
miRNA:   3'- cGUCGGCG-----AGUUGg---AGCCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 39609 0.67 0.496224
Target:  5'- cCAGcCCGCUUGggccaugagucccGCCUCGcuGCCACCGGc -3'
miRNA:   3'- cGUC-GGCGAGU-------------UGGAGC--CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 39211 0.67 0.545828
Target:  5'- gGCGGUCGCggaagguguuGCCcgcgcaggUGGCCACCAGg -3'
miRNA:   3'- -CGUCGGCGagu-------UGGa-------GCCGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 39040 0.67 0.547889
Target:  5'- uCAGCCGCagAugCaCGGUgGCCGGUu -3'
miRNA:   3'- cGUCGGCGagUugGaGCCGgUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 38318 0.67 0.517255
Target:  5'- cGCcGCCGCgggaCGuCUUCGGCCGCCc-- -3'
miRNA:   3'- -CGuCGGCGa---GUuGGAGCCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 36196 1.08 0.000638
Target:  5'- cGCAGCCGCUCAACCUCGGCCACCAGUu -3'
miRNA:   3'- -CGUCGGCGAGUUGGAGCCGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 35855 0.68 0.486345
Target:  5'- gGCGGUCGCUCAugCUuccccucCGGCUgACUGGg -3'
miRNA:   3'- -CGUCGGCGAGUugGA-------GCCGG-UGGUCa -5'
18447 3' -59.1 NC_004681.1 + 35362 0.68 0.487329
Target:  5'- gGCGGCC--UCAuCCUCGcugcguccaaGCCACCGGUg -3'
miRNA:   3'- -CGUCGGcgAGUuGGAGC----------CGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 33846 0.68 0.487329
Target:  5'- cCAGCCGCg----CUCGGCCGcuuCCAGUu -3'
miRNA:   3'- cGUCGGCGaguugGAGCCGGU---GGUCA- -5'
18447 3' -59.1 NC_004681.1 + 32787 0.67 0.527396
Target:  5'- cCAGCCGCgCGACgUCGGCgGgguacCCGGa -3'
miRNA:   3'- cGUCGGCGaGUUGgAGCCGgU-----GGUCa -5'
18447 3' -59.1 NC_004681.1 + 32231 0.66 0.579071
Target:  5'- cGCAGCgGCagcgCGGCCUCGuGUCuagcCCGGa -3'
miRNA:   3'- -CGUCGgCGa---GUUGGAGC-CGGu---GGUCa -5'
18447 3' -59.1 NC_004681.1 + 30249 0.68 0.446873
Target:  5'- cGCGGCCGCgccgccugagccCGACCcacaGGCCGCCuuGUa -3'
miRNA:   3'- -CGUCGGCGa-----------GUUGGag--CCGGUGGu-CA- -5'
18447 3' -59.1 NC_004681.1 + 30042 0.66 0.600073
Target:  5'- --cGCCGCcgCGGCCaUCGGCC-UCGGa -3'
miRNA:   3'- cguCGGCGa-GUUGG-AGCCGGuGGUCa -5'
18447 3' -59.1 NC_004681.1 + 29798 0.71 0.328559
Target:  5'- cGCGGCCGgUCGACCUa---CGCCAGg -3'
miRNA:   3'- -CGUCGGCgAGUUGGAgccgGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 29726 0.68 0.487329
Target:  5'- uCGGUCGUggUCGACgUCGaGCCAUCAGa -3'
miRNA:   3'- cGUCGGCG--AGUUGgAGC-CGGUGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.