miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18447 3' -59.1 NC_004681.1 + 12818 0.66 0.558231
Target:  5'- uGCAGCaCGUaCGGCCaUUGGC-GCCGGUa -3'
miRNA:   3'- -CGUCG-GCGaGUUGG-AGCCGgUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 55974 0.68 0.477535
Target:  5'- gGguGCCG---GugCUCGGCUGCCAGg -3'
miRNA:   3'- -CguCGGCgagUugGAGCCGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 70472 0.68 0.477535
Target:  5'- uGCGGCCGCgcguagacgUCAGCCguaUGGUCACUgaGGUu -3'
miRNA:   3'- -CGUCGGCG---------AGUUGGa--GCCGGUGG--UCA- -5'
18447 3' -59.1 NC_004681.1 + 35855 0.68 0.486345
Target:  5'- gGCGGUCGCUCAugCUuccccucCGGCUgACUGGg -3'
miRNA:   3'- -CGUCGGCGAGUugGA-------GCCGG-UGGUCa -5'
18447 3' -59.1 NC_004681.1 + 35362 0.68 0.487329
Target:  5'- gGCGGCC--UCAuCCUCGcugcguccaaGCCACCGGUg -3'
miRNA:   3'- -CGUCGGcgAGUuGGAGC----------CGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 45402 0.67 0.516246
Target:  5'- gGCAGCggugaagCGCUCAgcaacuucgccGCCUCcauGGCCGCCcucGGUg -3'
miRNA:   3'- -CGUCG-------GCGAGU-----------UGGAG---CCGGUGG---UCA- -5'
18447 3' -59.1 NC_004681.1 + 8844 0.67 0.517255
Target:  5'- -gAGCUGUUCAACUUCguccagGGCCGCCu-- -3'
miRNA:   3'- cgUCGGCGAGUUGGAG------CCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 47442 0.67 0.537609
Target:  5'- gGUGGauGCUCAACCUCcacgaguGCCAUCAGg -3'
miRNA:   3'- -CGUCggCGAGUUGGAGc------CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 18295 0.67 0.547889
Target:  5'- cGCAGUC-CUCGACUggCGGUCAgCAGc -3'
miRNA:   3'- -CGUCGGcGAGUUGGa-GCCGGUgGUCa -5'
18447 3' -59.1 NC_004681.1 + 25074 0.68 0.46207
Target:  5'- gGCGGCaccuCGCUCAGCCUCcucggcaccucgguuGGCCGCgGa- -3'
miRNA:   3'- -CGUCG----GCGAGUUGGAG---------------CCGGUGgUca -5'
18447 3' -59.1 NC_004681.1 + 19781 0.68 0.43938
Target:  5'- cGCugguguGCgGCUCcGCUaagaaCGGCCGCCAGUa -3'
miRNA:   3'- -CGu-----CGgCGAGuUGGa----GCCGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 23421 0.69 0.430115
Target:  5'- --cGCUGUucaccgUCGACCUCGGCCACUcccgcAGUu -3'
miRNA:   3'- cguCGGCG------AGUUGGAGCCGGUGG-----UCA- -5'
18447 3' -59.1 NC_004681.1 + 65783 0.75 0.167099
Target:  5'- gGCGGaguucguCCGuCUCGGCCUCGGCCGCCc-- -3'
miRNA:   3'- -CGUC-------GGC-GAGUUGGAGCCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 8985 0.73 0.233871
Target:  5'- --cGCUGUUCGgcgccACCUCGGCCACCGu- -3'
miRNA:   3'- cguCGGCGAGU-----UGGAGCCGGUGGUca -5'
18447 3' -59.1 NC_004681.1 + 46450 0.72 0.252026
Target:  5'- cGCGGCCuGCUCcgguACCUCGGCCuggaGGUc -3'
miRNA:   3'- -CGUCGG-CGAGu---UGGAGCCGGugg-UCA- -5'
18447 3' -59.1 NC_004681.1 + 27915 0.72 0.284841
Target:  5'- aGCGGCaCGCggGGCCUCGGCgGCaCGGc -3'
miRNA:   3'- -CGUCG-GCGagUUGGAGCCGgUG-GUCa -5'
18447 3' -59.1 NC_004681.1 + 57681 0.71 0.313455
Target:  5'- cGCAG-CGCUCGAcgcaauCCUCGGCCAacccgaCAGg -3'
miRNA:   3'- -CGUCgGCGAGUU------GGAGCCGGUg-----GUCa -5'
18447 3' -59.1 NC_004681.1 + 7263 0.7 0.344193
Target:  5'- cGCGGCCGUcC-ACCUCGG-CGCCgAGUg -3'
miRNA:   3'- -CGUCGGCGaGuUGGAGCCgGUGG-UCA- -5'
18447 3' -59.1 NC_004681.1 + 62529 0.7 0.360356
Target:  5'- gGCAGCCGCcuccgacaccgUCuACCUCGGUguCAuCCAGg -3'
miRNA:   3'- -CGUCGGCG-----------AGuUGGAGCCG--GU-GGUCa -5'
18447 3' -59.1 NC_004681.1 + 16153 0.69 0.403024
Target:  5'- gGCGGCCaucccgucGCUCAucgcgcuguCCUCGGCCAUCu-- -3'
miRNA:   3'- -CGUCGG--------CGAGUu--------GGAGCCGGUGGuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.