Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18447 | 3' | -59.1 | NC_004681.1 | + | 49668 | 0.67 | 0.541713 |
Target: 5'- uGCAGUCGUUgguGCCUCGGgCCugcccgcgggggaagGCCAGg -3' miRNA: 3'- -CGUCGGCGAgu-UGGAGCC-GG---------------UGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 39211 | 0.67 | 0.545828 |
Target: 5'- gGCGGUCGCggaagguguuGCCcgcgcaggUGGCCACCAGg -3' miRNA: 3'- -CGUCGGCGagu-------UGGa-------GCCGGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 39040 | 0.67 | 0.547889 |
Target: 5'- uCAGCCGCagAugCaCGGUgGCCGGUu -3' miRNA: 3'- cGUCGGCGagUugGaGCCGgUGGUCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 33846 | 0.68 | 0.487329 |
Target: 5'- cCAGCCGCg----CUCGGCCGcuuCCAGUu -3' miRNA: 3'- cGUCGGCGaguugGAGCCGGU---GGUCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 58628 | 0.68 | 0.487329 |
Target: 5'- gGCAugauuGUCGCg----CUCGGCCACCAGUu -3' miRNA: 3'- -CGU-----CGGCGaguugGAGCCGGUGGUCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 28151 | 0.68 | 0.458246 |
Target: 5'- --uGCCGC-CAccGCCUCGaCCGCCAGc -3' miRNA: 3'- cguCGGCGaGU--UGGAGCcGGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 9925 | 0.73 | 0.236226 |
Target: 5'- uGCGGCCGCUgcggaCAACCUUGGUCucgaccucguccucgACCAGc -3' miRNA: 3'- -CGUCGGCGA-----GUUGGAGCCGG---------------UGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 3342 | 0.71 | 0.320186 |
Target: 5'- aGCgAGCCaggaagaGCgCAGCCUCGGCCAggucCCGGUu -3' miRNA: 3'- -CG-UCGG-------CGaGUUGGAGCCGGU----GGUCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 50407 | 0.71 | 0.32094 |
Target: 5'- gGguGCCcaugaGUUCAGCgUCGGCCGCgGGg -3' miRNA: 3'- -CguCGG-----CGAGUUGgAGCCGGUGgUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 56325 | 0.71 | 0.327791 |
Target: 5'- uGCAGCuCGCUCGggucgacGCCgguccaGGCCACCGa- -3' miRNA: 3'- -CGUCG-GCGAGU-------UGGag----CCGGUGGUca -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 29798 | 0.71 | 0.328559 |
Target: 5'- cGCGGCCGgUCGACCUa---CGCCAGg -3' miRNA: 3'- -CGUCGGCgAGUUGGAgccgGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 10178 | 0.7 | 0.344193 |
Target: 5'- gGUAGCC-CUCAACCUUGGagauuucgaCUACCGGa -3' miRNA: 3'- -CGUCGGcGAGUUGGAGCC---------GGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 69005 | 0.69 | 0.385576 |
Target: 5'- gGCGGCCGUgacgauggUCAgcgccucgaugGCgUCGGCCgcgGCCAGUa -3' miRNA: 3'- -CGUCGGCG--------AGU-----------UGgAGCCGG---UGGUCA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 17907 | 0.69 | 0.385576 |
Target: 5'- cGCGGCCGCcgcgUUGAUgUCGGCCugCGu- -3' miRNA: 3'- -CGUCGGCG----AGUUGgAGCCGGugGUca -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 46059 | 0.69 | 0.394238 |
Target: 5'- gGCAGUCGCUCAuuuguuUCUUGGUugUACCGGa -3' miRNA: 3'- -CGUCGGCGAGUu-----GGAGCCG--GUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 16001 | 0.69 | 0.406574 |
Target: 5'- cGCGGCCaCggCGAUCUucacggugacccacgCGGCCGCCAGg -3' miRNA: 3'- -CGUCGGcGa-GUUGGA---------------GCCGGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 57397 | 0.69 | 0.411935 |
Target: 5'- aCAGCCcCUUAccACCcuucUCGGCUACCAGg -3' miRNA: 3'- cGUCGGcGAGU--UGG----AGCCGGUGGUCa -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 23875 | 0.68 | 0.43938 |
Target: 5'- uGCGGUgGCUU--CCUCGGUCACCu-- -3' miRNA: 3'- -CGUCGgCGAGuuGGAGCCGGUGGuca -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 30249 | 0.68 | 0.446873 |
Target: 5'- cGCGGCCGCgccgccugagccCGACCcacaGGCCGCCuuGUa -3' miRNA: 3'- -CGUCGGCGa-----------GUUGGag--CCGGUGGu-CA- -5' |
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18447 | 3' | -59.1 | NC_004681.1 | + | 28241 | 0.68 | 0.448758 |
Target: 5'- uGCcGCCGCUCGAUC-CGccGCCGCCGu- -3' miRNA: 3'- -CGuCGGCGAGUUGGaGC--CGGUGGUca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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