miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18447 3' -59.1 NC_004681.1 + 55889 0.73 0.233871
Target:  5'- aGCAGCCGCUCucGACCUauggcgaGGUCGuuguuCCAGUa -3'
miRNA:   3'- -CGUCGGCGAG--UUGGAg------CCGGU-----GGUCA- -5'
18447 3' -59.1 NC_004681.1 + 33846 0.68 0.487329
Target:  5'- cCAGCCGCg----CUCGGCCGcuuCCAGUu -3'
miRNA:   3'- cGUCGGCGaguugGAGCCGGU---GGUCA- -5'
18447 3' -59.1 NC_004681.1 + 39609 0.67 0.496224
Target:  5'- cCAGcCCGCUUGggccaugagucccGCCUCGcuGCCACCGGc -3'
miRNA:   3'- cGUC-GGCGAGU-------------UGGAGC--CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 14424 0.66 0.600073
Target:  5'- gGCGcGCaGCUCAuuggcccgcGCCUCGGCgACCuGa -3'
miRNA:   3'- -CGU-CGgCGAGU---------UGGAGCCGgUGGuCa -5'
18447 3' -59.1 NC_004681.1 + 56325 0.71 0.327791
Target:  5'- uGCAGCuCGCUCGggucgacGCCgguccaGGCCACCGa- -3'
miRNA:   3'- -CGUCG-GCGAGU-------UGGag----CCGGUGGUca -5'
18447 3' -59.1 NC_004681.1 + 29798 0.71 0.328559
Target:  5'- cGCGGCCGgUCGACCUa---CGCCAGg -3'
miRNA:   3'- -CGUCGGCgAGUUGGAgccgGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 69005 0.69 0.385576
Target:  5'- gGCGGCCGUgacgauggUCAgcgccucgaugGCgUCGGCCgcgGCCAGUa -3'
miRNA:   3'- -CGUCGGCG--------AGU-----------UGgAGCCGG---UGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 17907 0.69 0.385576
Target:  5'- cGCGGCCGCcgcgUUGAUgUCGGCCugCGu- -3'
miRNA:   3'- -CGUCGGCG----AGUUGgAGCCGGugGUca -5'
18447 3' -59.1 NC_004681.1 + 57397 0.69 0.411935
Target:  5'- aCAGCCcCUUAccACCcuucUCGGCUACCAGg -3'
miRNA:   3'- cGUCGGcGAGU--UGG----AGCCGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 58628 0.68 0.487329
Target:  5'- gGCAugauuGUCGCg----CUCGGCCACCAGUu -3'
miRNA:   3'- -CGU-----CGGCGaguugGAGCCGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 30249 0.68 0.446873
Target:  5'- cGCGGCCGCgccgccugagccCGACCcacaGGCCGCCuuGUa -3'
miRNA:   3'- -CGUCGGCGa-----------GUUGGag--CCGGUGGu-CA- -5'
18447 3' -59.1 NC_004681.1 + 16001 0.69 0.406574
Target:  5'- cGCGGCCaCggCGAUCUucacggugacccacgCGGCCGCCAGg -3'
miRNA:   3'- -CGUCGGcGa-GUUGGA---------------GCCGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 9925 0.73 0.236226
Target:  5'- uGCGGCCGCUgcggaCAACCUUGGUCucgaccucguccucgACCAGc -3'
miRNA:   3'- -CGUCGGCGA-----GUUGGAGCCGG---------------UGGUCa -5'
18447 3' -59.1 NC_004681.1 + 28241 0.68 0.448758
Target:  5'- uGCcGCCGCUCGAUC-CGccGCCGCCGu- -3'
miRNA:   3'- -CGuCGGCGAGUUGGaGC--CGGUGGUca -5'
18447 3' -59.1 NC_004681.1 + 3342 0.71 0.320186
Target:  5'- aGCgAGCCaggaagaGCgCAGCCUCGGCCAggucCCGGUu -3'
miRNA:   3'- -CG-UCGG-------CGaGUUGGAGCCGGU----GGUCA- -5'
18447 3' -59.1 NC_004681.1 + 46059 0.69 0.394238
Target:  5'- gGCAGUCGCUCAuuuguuUCUUGGUugUACCGGa -3'
miRNA:   3'- -CGUCGGCGAGUu-----GGAGCCG--GUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 28151 0.68 0.458246
Target:  5'- --uGCCGC-CAccGCCUCGaCCGCCAGc -3'
miRNA:   3'- cguCGGCGaGU--UGGAGCcGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 29726 0.68 0.487329
Target:  5'- uCGGUCGUggUCGACgUCGaGCCAUCAGa -3'
miRNA:   3'- cGUCGGCG--AGUUGgAGC-CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 50407 0.71 0.32094
Target:  5'- gGguGCCcaugaGUUCAGCgUCGGCCGCgGGg -3'
miRNA:   3'- -CguCGG-----CGAGUUGgAGCCGGUGgUCa -5'
18447 3' -59.1 NC_004681.1 + 10178 0.7 0.344193
Target:  5'- gGUAGCC-CUCAACCUUGGagauuucgaCUACCGGa -3'
miRNA:   3'- -CGUCGGcGAGUUGGAGCC---------GGUGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.