miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18447 3' -59.1 NC_004681.1 + 24943 0.67 0.517255
Target:  5'- gGCGGCCGC-C-GCC-CGcGCCGCCGa- -3'
miRNA:   3'- -CGUCGGCGaGuUGGaGC-CGGUGGUca -5'
18447 3' -59.1 NC_004681.1 + 38318 0.67 0.517255
Target:  5'- cGCcGCCGCgggaCGuCUUCGGCCGCCc-- -3'
miRNA:   3'- -CGuCGGCGa---GUuGGAGCCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 39609 0.67 0.496224
Target:  5'- cCAGcCCGCUUGggccaugagucccGCCUCGcuGCCACCGGc -3'
miRNA:   3'- cGUC-GGCGAGU-------------UGGAGC--CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 58628 0.68 0.487329
Target:  5'- gGCAugauuGUCGCg----CUCGGCCACCAGUu -3'
miRNA:   3'- -CGU-----CGGCGaguugGAGCCGGUGGUCA- -5'
18447 3' -59.1 NC_004681.1 + 16714 0.66 0.589555
Target:  5'- --cGCCGcCUCcAUCgCGGCCugCAGUu -3'
miRNA:   3'- cguCGGC-GAGuUGGaGCCGGugGUCA- -5'
18447 3' -59.1 NC_004681.1 + 49668 0.67 0.541713
Target:  5'- uGCAGUCGUUgguGCCUCGGgCCugcccgcgggggaagGCCAGg -3'
miRNA:   3'- -CGUCGGCGAgu-UGGAGCC-GG---------------UGGUCa -5'
18447 3' -59.1 NC_004681.1 + 2126 0.67 0.507194
Target:  5'- uGCGGCCGCccuccaCGACCaccUGGCCgcgGCCGGa -3'
miRNA:   3'- -CGUCGGCGa-----GUUGGa--GCCGG---UGGUCa -5'
18447 3' -59.1 NC_004681.1 + 28151 0.68 0.458246
Target:  5'- --uGCCGC-CAccGCCUCGaCCGCCAGc -3'
miRNA:   3'- cguCGGCGaGU--UGGAGCcGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 62953 0.67 0.537609
Target:  5'- aGCGGUCGCggUCcuUCUCGGCgCGCuCGGUg -3'
miRNA:   3'- -CGUCGGCG--AGuuGGAGCCG-GUG-GUCA- -5'
18447 3' -59.1 NC_004681.1 + 28241 0.68 0.448758
Target:  5'- uGCcGCCGCUCGAUC-CGccGCCGCCGu- -3'
miRNA:   3'- -CGuCGGCGAGUUGGaGC--CGGUGGUca -5'
18447 3' -59.1 NC_004681.1 + 66067 0.67 0.514229
Target:  5'- gGCAGCCuuCUCGGCCuUCGuGCCguagcggaugucauGCCAGa -3'
miRNA:   3'- -CGUCGGc-GAGUUGG-AGC-CGG--------------UGGUCa -5'
18447 3' -59.1 NC_004681.1 + 65213 0.67 0.518266
Target:  5'- gGCGGCCGUacuucagggcgccuUCcaucauugccaggccGACCUCGGCgACCAc- -3'
miRNA:   3'- -CGUCGGCG--------------AG---------------UUGGAGCCGgUGGUca -5'
18447 3' -59.1 NC_004681.1 + 7434 0.67 0.497217
Target:  5'- cGCGGCgGCggggUCAGCCcCGGgUGCCGGg -3'
miRNA:   3'- -CGUCGgCG----AGUUGGaGCCgGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 52233 0.67 0.497217
Target:  5'- uGCAGCUGCUUGGCCgccaccuugaGGCUGCgGGa -3'
miRNA:   3'- -CGUCGGCGAGUUGGag--------CCGGUGgUCa -5'
18447 3' -59.1 NC_004681.1 + 29726 0.68 0.487329
Target:  5'- uCGGUCGUggUCGACgUCGaGCCAUCAGa -3'
miRNA:   3'- cGUCGGCG--AGUUGgAGC-CGGUGGUCa -5'
18447 3' -59.1 NC_004681.1 + 33846 0.68 0.487329
Target:  5'- cCAGCCGCg----CUCGGCCGcuuCCAGUu -3'
miRNA:   3'- cGUCGGCGaguugGAGCCGGU---GGUCA- -5'
18447 3' -59.1 NC_004681.1 + 14424 0.66 0.600073
Target:  5'- gGCGcGCaGCUCAuuggcccgcGCCUCGGCgACCuGa -3'
miRNA:   3'- -CGU-CGgCGAGU---------UGGAGCCGgUGGuCa -5'
18447 3' -59.1 NC_004681.1 + 18479 0.66 0.589555
Target:  5'- cGCGGCCGC-C-GCCU-GGCCuGCCAu- -3'
miRNA:   3'- -CGUCGGCGaGuUGGAgCCGG-UGGUca -5'
18447 3' -59.1 NC_004681.1 + 40563 0.66 0.558231
Target:  5'- uCGGCCGCggcguUCAAUgucaUCGGCCGCCu-- -3'
miRNA:   3'- cGUCGGCG-----AGUUGg---AGCCGGUGGuca -5'
18447 3' -59.1 NC_004681.1 + 39211 0.67 0.545828
Target:  5'- gGCGGUCGCggaagguguuGCCcgcgcaggUGGCCACCAGg -3'
miRNA:   3'- -CGUCGGCGagu-------UGGa-------GCCGGUGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.