miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18447 5' -54.8 NC_004681.1 + 33434 0.66 0.8049
Target:  5'- uGAuGUGCGGGCGGGuGCccUGGACg- -3'
miRNA:   3'- uCU-CACGCCCGUCUcCGauACUUGag -5'
18447 5' -54.8 NC_004681.1 + 14453 0.66 0.765519
Target:  5'- ---aUGCGGGCGGAGGUggccucgAUGuucuuggcgcgcAGCUCa -3'
miRNA:   3'- ucucACGCCCGUCUCCGa------UAC------------UUGAG- -5'
18447 5' -54.8 NC_004681.1 + 69993 0.66 0.763487
Target:  5'- gAGAGuUGCGGGUAGcuaugcccgcuGGCUuucgcgucucgGAGCUCa -3'
miRNA:   3'- -UCUC-ACGCCCGUCu----------CCGAua---------CUUGAG- -5'
18447 5' -54.8 NC_004681.1 + 64911 0.66 0.755305
Target:  5'- cGGGGUGCccuCGGAGGCgggAUGcAGCUCg -3'
miRNA:   3'- -UCUCACGcccGUCUCCGa--UAC-UUGAG- -5'
18447 5' -54.8 NC_004681.1 + 23465 0.68 0.691795
Target:  5'- uGGAG-GCGGGCAGgAGGU--UGAccacCUCg -3'
miRNA:   3'- -UCUCaCGCCCGUC-UCCGauACUu---GAG- -5'
18447 5' -54.8 NC_004681.1 + 72940 0.68 0.670047
Target:  5'- -uGGUGagcuugaGGGCAGGGG--AUGGACUCg -3'
miRNA:   3'- ucUCACg------CCCGUCUCCgaUACUUGAG- -5'
18447 5' -54.8 NC_004681.1 + 11031 0.68 0.648158
Target:  5'- gGGAGUGCGGGU--GGGgaAUGGAgUUc -3'
miRNA:   3'- -UCUCACGCCCGucUCCgaUACUUgAG- -5'
18447 5' -54.8 NC_004681.1 + 41266 0.68 0.637186
Target:  5'- aAGAGcGCaGGCcgcGGAGGUgcuUGGACUCa -3'
miRNA:   3'- -UCUCaCGcCCG---UCUCCGau-ACUUGAG- -5'
18447 5' -54.8 NC_004681.1 + 23151 0.69 0.62621
Target:  5'- cGAuUGCGGGCGGGGacGUUGUGGAUUg -3'
miRNA:   3'- uCUcACGCCCGUCUC--CGAUACUUGAg -5'
18447 5' -54.8 NC_004681.1 + 70905 0.69 0.604282
Target:  5'- -cGGUGCGcGCuaccgcuGAGGCUAUGcGACUCa -3'
miRNA:   3'- ucUCACGCcCGu------CUCCGAUAC-UUGAG- -5'
18447 5' -54.8 NC_004681.1 + 58936 0.69 0.593349
Target:  5'- -uGGUGCGGGUcgaAGAGGUUGuUGGcCUCu -3'
miRNA:   3'- ucUCACGCCCG---UCUCCGAU-ACUuGAG- -5'
18447 5' -54.8 NC_004681.1 + 14827 0.7 0.57159
Target:  5'- gAGGGcGUGGGCcuggaAGAGGCcAUGAACg- -3'
miRNA:   3'- -UCUCaCGCCCG-----UCUCCGaUACUUGag -5'
18447 5' -54.8 NC_004681.1 + 23771 0.76 0.271424
Target:  5'- cGGAG-GCGGGCgcguaGGAGGCcagcucgAUGGGCUCa -3'
miRNA:   3'- -UCUCaCGCCCG-----UCUCCGa------UACUUGAG- -5'
18447 5' -54.8 NC_004681.1 + 36231 1.1 0.00106
Target:  5'- gAGAGUGCGGGCAGAGGCUAUGAACUCg -3'
miRNA:   3'- -UCUCACGCCCGUCUCCGAUACUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.