Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18447 | 5' | -54.8 | NC_004681.1 | + | 36231 | 1.1 | 0.00106 |
Target: 5'- gAGAGUGCGGGCAGAGGCUAUGAACUCg -3' miRNA: 3'- -UCUCACGCCCGUCUCCGAUACUUGAG- -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 14827 | 0.7 | 0.57159 |
Target: 5'- gAGGGcGUGGGCcuggaAGAGGCcAUGAACg- -3' miRNA: 3'- -UCUCaCGCCCG-----UCUCCGaUACUUGag -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 69993 | 0.66 | 0.763487 |
Target: 5'- gAGAGuUGCGGGUAGcuaugcccgcuGGCUuucgcgucucgGAGCUCa -3' miRNA: 3'- -UCUC-ACGCCCGUCu----------CCGAua---------CUUGAG- -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 14453 | 0.66 | 0.765519 |
Target: 5'- ---aUGCGGGCGGAGGUggccucgAUGuucuuggcgcgcAGCUCa -3' miRNA: 3'- ucucACGCCCGUCUCCGa------UAC------------UUGAG- -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 64911 | 0.66 | 0.755305 |
Target: 5'- cGGGGUGCccuCGGAGGCgggAUGcAGCUCg -3' miRNA: 3'- -UCUCACGcccGUCUCCGa--UAC-UUGAG- -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 23465 | 0.68 | 0.691795 |
Target: 5'- uGGAG-GCGGGCAGgAGGU--UGAccacCUCg -3' miRNA: 3'- -UCUCaCGCCCGUC-UCCGauACUu---GAG- -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 72940 | 0.68 | 0.670047 |
Target: 5'- -uGGUGagcuugaGGGCAGGGG--AUGGACUCg -3' miRNA: 3'- ucUCACg------CCCGUCUCCgaUACUUGAG- -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 11031 | 0.68 | 0.648158 |
Target: 5'- gGGAGUGCGGGU--GGGgaAUGGAgUUc -3' miRNA: 3'- -UCUCACGCCCGucUCCgaUACUUgAG- -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 41266 | 0.68 | 0.637186 |
Target: 5'- aAGAGcGCaGGCcgcGGAGGUgcuUGGACUCa -3' miRNA: 3'- -UCUCaCGcCCG---UCUCCGau-ACUUGAG- -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 23151 | 0.69 | 0.62621 |
Target: 5'- cGAuUGCGGGCGGGGacGUUGUGGAUUg -3' miRNA: 3'- uCUcACGCCCGUCUC--CGAUACUUGAg -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 70905 | 0.69 | 0.604282 |
Target: 5'- -cGGUGCGcGCuaccgcuGAGGCUAUGcGACUCa -3' miRNA: 3'- ucUCACGCcCGu------CUCCGAUAC-UUGAG- -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 58936 | 0.69 | 0.593349 |
Target: 5'- -uGGUGCGGGUcgaAGAGGUUGuUGGcCUCu -3' miRNA: 3'- ucUCACGCCCG---UCUCCGAU-ACUuGAG- -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 23771 | 0.76 | 0.271424 |
Target: 5'- cGGAG-GCGGGCgcguaGGAGGCcagcucgAUGGGCUCa -3' miRNA: 3'- -UCUCaCGCCCG-----UCUCCGa------UACUUGAG- -5' |
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18447 | 5' | -54.8 | NC_004681.1 | + | 33434 | 0.66 | 0.8049 |
Target: 5'- uGAuGUGCGGGCGGGuGCccUGGACg- -3' miRNA: 3'- uCU-CACGCCCGUCUcCGauACUUGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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