miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18449 3' -54.8 NC_004681.1 + 53219 0.66 0.863811
Target:  5'- uCGCCUCCGcuaGCUcaggUgUCGAgUGGCACCUg -3'
miRNA:   3'- cGUGGGGGC---UGA----AgAGCU-ACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 24970 0.66 0.863811
Target:  5'- uCACCCCCGGCgacgggggCUCuGgcGGCACa- -3'
miRNA:   3'- cGUGGGGGCUGaa------GAG-CuaCUGUGgg -5'
18449 3' -54.8 NC_004681.1 + 22606 0.66 0.863811
Target:  5'- cGUGCCCaCCucCUUCUCcacgGACACCg -3'
miRNA:   3'- -CGUGGG-GGcuGAAGAGcua-CUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 6473 0.66 0.863811
Target:  5'- --cCCCUCGACagcgccaUCGGgcgUGGCGCCCa -3'
miRNA:   3'- cguGGGGGCUGaag----AGCU---ACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 629 0.66 0.863811
Target:  5'- cGCGCCUUCGGCccggUGAUcGACGCCg -3'
miRNA:   3'- -CGUGGGGGCUGaagaGCUA-CUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 44989 0.66 0.847632
Target:  5'- uGCAUCCUCGGC--CUCG-UGGgcguCGCCCg -3'
miRNA:   3'- -CGUGGGGGCUGaaGAGCuACU----GUGGG- -5'
18449 3' -54.8 NC_004681.1 + 51132 0.66 0.847632
Target:  5'- uCGCCgUCGcCgagggCGAUGACGCCCu -3'
miRNA:   3'- cGUGGgGGCuGaaga-GCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 62947 0.66 0.847632
Target:  5'- cGCGguccUUCUCGGCgcgCUCGGUG-CGCCCc -3'
miRNA:   3'- -CGU----GGGGGCUGaa-GAGCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 59019 0.66 0.83922
Target:  5'- gGCGCCCaCCG-CgaaUUUGAccacGACACCCa -3'
miRNA:   3'- -CGUGGG-GGCuGaa-GAGCUa---CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 62210 0.66 0.830605
Target:  5'- uGCGCUCguccaCCGACUgcagCagGAUGcCGCCCa -3'
miRNA:   3'- -CGUGGG-----GGCUGAa---GagCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 19058 0.66 0.830605
Target:  5'- uGCACgCCCCGAacUCUUGGagGACAaagCCg -3'
miRNA:   3'- -CGUG-GGGGCUgaAGAGCUa-CUGUg--GG- -5'
18449 3' -54.8 NC_004681.1 + 19058 0.66 0.830604
Target:  5'- cCGCCgagCUCGACUUCacugUCGA-GGCAUCCg -3'
miRNA:   3'- cGUGG---GGGCUGAAG----AGCUaCUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 59565 0.66 0.821793
Target:  5'- uGCA-CCCgGGCUUCguaGcUGACGCCUc -3'
miRNA:   3'- -CGUgGGGgCUGAAGag-CuACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 17557 0.66 0.821793
Target:  5'- gGCACCCCCuucaACUggggCaGUGACGCCg -3'
miRNA:   3'- -CGUGGGGGc---UGAaga-GcUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 53502 0.66 0.821793
Target:  5'- gGCACCCauGACcg--CGGUGACAUCg -3'
miRNA:   3'- -CGUGGGggCUGaagaGCUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 69047 0.66 0.821793
Target:  5'- cGCACCUgCGACac--CGAUGGCugCg -3'
miRNA:   3'- -CGUGGGgGCUGaagaGCUACUGugGg -5'
18449 3' -54.8 NC_004681.1 + 47218 0.67 0.812795
Target:  5'- cGCgGCCCUCGGCgUUCUCGu---CGCUCa -3'
miRNA:   3'- -CG-UGGGGGCUG-AAGAGCuacuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 58766 0.67 0.812794
Target:  5'- -gACCCCCGAUggugUCacgcgcaccgUCGAggcgcGCGCCCa -3'
miRNA:   3'- cgUGGGGGCUGa---AG----------AGCUac---UGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 39261 0.67 0.811885
Target:  5'- cGCGgCCCgGAUgccggUCUCGGUGaacagcacgaugaGCGCCUu -3'
miRNA:   3'- -CGUgGGGgCUGa----AGAGCUAC-------------UGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 12220 0.67 0.81006
Target:  5'- cGCAUCCCCGguggcccguucuggGCUgagUCGG-GugGCCCg -3'
miRNA:   3'- -CGUGGGGGC--------------UGAag-AGCUaCugUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.