miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18449 3' -54.8 NC_004681.1 + 44739 0.69 0.704249
Target:  5'- gGCGCCUUCGACg--UCGAgGACuCCCu -3'
miRNA:   3'- -CGUGGGGGCUGaagAGCUaCUGuGGG- -5'
18449 3' -54.8 NC_004681.1 + 16793 0.7 0.598192
Target:  5'- gGCAUCCCCGGCaugCcCGAgGAC-CCCu -3'
miRNA:   3'- -CGUGGGGGCUGaa-GaGCUaCUGuGGG- -5'
18449 3' -54.8 NC_004681.1 + 30866 0.7 0.640783
Target:  5'- cCGCCCgCCGACccgCUgGAgccccgcGACACCCu -3'
miRNA:   3'- cGUGGG-GGCUGaa-GAgCUa------CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 7806 0.7 0.651435
Target:  5'- -gACUCCCGACcUCccCGAUGAgGCCg -3'
miRNA:   3'- cgUGGGGGCUGaAGa-GCUACUgUGGg -5'
18449 3' -54.8 NC_004681.1 + 58878 0.7 0.651435
Target:  5'- cGCGCgCCUCGACggugCGcGUGACACCa -3'
miRNA:   3'- -CGUG-GGGGCUGaagaGC-UACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 16054 0.7 0.647176
Target:  5'- gGCACaCCCCGAaugaacgaGAUGGCGCCa -3'
miRNA:   3'- -CGUG-GGGGCUgaagag--CUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 13378 0.7 0.619467
Target:  5'- gGCGCCCUCGGa--CUCGAUGGC-CUg -3'
miRNA:   3'- -CGUGGGGGCUgaaGAGCUACUGuGGg -5'
18449 3' -54.8 NC_004681.1 + 62534 0.71 0.55603
Target:  5'- cCGCCUCCGACaccgucuacCUCGGUGuCAUCCa -3'
miRNA:   3'- cGUGGGGGCUGaa-------GAGCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 42526 0.71 0.566503
Target:  5'- uGCGCCCCCGgcauccACUUCUUcau--CACCCg -3'
miRNA:   3'- -CGUGGGGGC------UGAAGAGcuacuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 22670 0.71 0.544575
Target:  5'- cGCAUCCCCGGCac--CGAccagcccaaggagUGGCGCCCc -3'
miRNA:   3'- -CGUGGGGGCUGaagaGCU-------------ACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 7604 0.71 0.577026
Target:  5'- aCGCCCgCGACUUCgccgaCGAUGGCcagACCg -3'
miRNA:   3'- cGUGGGgGCUGAAGa----GCUACUG---UGGg -5'
18449 3' -54.8 NC_004681.1 + 50847 0.71 0.577026
Target:  5'- gGCGgCUCgGACUUgCUCGAUGGuCAUCCc -3'
miRNA:   3'- -CGUgGGGgCUGAA-GAGCUACU-GUGGG- -5'
18449 3' -54.8 NC_004681.1 + 50236 0.72 0.51477
Target:  5'- gGCGCCCUCGGCUUgUgGAUcaaGGCGCUg -3'
miRNA:   3'- -CGUGGGGGCUGAAgAgCUA---CUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 709 0.72 0.514771
Target:  5'- gGCGCggaggaaguUCUCGACggCgUCGAUGGCGCCCu -3'
miRNA:   3'- -CGUG---------GGGGCUGaaG-AGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 2707 0.72 0.524978
Target:  5'- -aAUCCCCGACU--UgGAUGuCACCCa -3'
miRNA:   3'- cgUGGGGGCUGAagAgCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 35230 0.72 0.494606
Target:  5'- uGguCgCUCGACUUCUCGG-GGCGCCUc -3'
miRNA:   3'- -CguGgGGGCUGAAGAGCUaCUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 33628 0.73 0.454459
Target:  5'- -gACCCuuGACggUCUCGAUGGCcuucaccGCCUg -3'
miRNA:   3'- cgUGGGggCUGa-AGAGCUACUG-------UGGG- -5'
18449 3' -54.8 NC_004681.1 + 5539 0.74 0.408898
Target:  5'- gGUACCCCCGagaaGCUgaugC-CGAUG-CACCCg -3'
miRNA:   3'- -CGUGGGGGC----UGAa---GaGCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 40109 0.74 0.417965
Target:  5'- uGCACCCCgGGggUCgccaggUCGGUGAcCGCCCg -3'
miRNA:   3'- -CGUGGGGgCUgaAG------AGCUACU-GUGGG- -5'
18449 3' -54.8 NC_004681.1 + 46450 0.75 0.382449
Target:  5'- cCACCUCCaGACUggggC-CGAUGAUGCCCa -3'
miRNA:   3'- cGUGGGGG-CUGAa---GaGCUACUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.