miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18449 3' -54.8 NC_004681.1 + 37517 1.14 0.000922
Target:  5'- aGCACCCCCGACUUCUCGAUGACACCCu -3'
miRNA:   3'- -CGUGGGGGCUGAAGAGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 20164 0.86 0.079006
Target:  5'- cGCugCCCCGGCUgcgCUCGGUGAucgacuuguCGCCCa -3'
miRNA:   3'- -CGugGGGGCUGAa--GAGCUACU---------GUGGG- -5'
18449 3' -54.8 NC_004681.1 + 62665 0.8 0.182969
Target:  5'- cGCGCUCCCGGCguuccaUCUCcugGAUGACACCg -3'
miRNA:   3'- -CGUGGGGGCUGa-----AGAG---CUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 1267 0.79 0.197826
Target:  5'- -gGCCCCCGACaUgUCGGagGGCGCCCa -3'
miRNA:   3'- cgUGGGGGCUGaAgAGCUa-CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 33385 0.77 0.261532
Target:  5'- gGCGCgaCCGGCg--UCGAUGACACCCg -3'
miRNA:   3'- -CGUGggGGCUGaagAGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 45297 0.76 0.302843
Target:  5'- uCAUCCCCGGugaUUCUCGAUGGCGCg- -3'
miRNA:   3'- cGUGGGGGCUg--AAGAGCUACUGUGgg -5'
18449 3' -54.8 NC_004681.1 + 46450 0.75 0.382449
Target:  5'- cCACCUCCaGACUggggC-CGAUGAUGCCCa -3'
miRNA:   3'- cGUGGGGG-CUGAa---GaGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 5539 0.74 0.408898
Target:  5'- gGUACCCCCGagaaGCUgaugC-CGAUG-CACCCg -3'
miRNA:   3'- -CGUGGGGGC----UGAa---GaGCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 40109 0.74 0.417965
Target:  5'- uGCACCCCgGGggUCgccaggUCGGUGAcCGCCCg -3'
miRNA:   3'- -CGUGGGGgCUgaAG------AGCUACU-GUGGG- -5'
18449 3' -54.8 NC_004681.1 + 33628 0.73 0.454459
Target:  5'- -gACCCuuGACggUCUCGAUGGCcuucaccGCCUg -3'
miRNA:   3'- cgUGGGggCUGa-AGAGCUACUG-------UGGG- -5'
18449 3' -54.8 NC_004681.1 + 35230 0.72 0.494606
Target:  5'- uGguCgCUCGACUUCUCGG-GGCGCCUc -3'
miRNA:   3'- -CguGgGGGCUGAAGAGCUaCUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 50236 0.72 0.51477
Target:  5'- gGCGCCCUCGGCUUgUgGAUcaaGGCGCUg -3'
miRNA:   3'- -CGUGGGGGCUGAAgAgCUA---CUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 709 0.72 0.514771
Target:  5'- gGCGCggaggaaguUCUCGACggCgUCGAUGGCGCCCu -3'
miRNA:   3'- -CGUG---------GGGGCUGaaG-AGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 2707 0.72 0.524978
Target:  5'- -aAUCCCCGACU--UgGAUGuCACCCa -3'
miRNA:   3'- cgUGGGGGCUGAagAgCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 22670 0.71 0.544575
Target:  5'- cGCAUCCCCGGCac--CGAccagcccaaggagUGGCGCCCc -3'
miRNA:   3'- -CGUGGGGGCUGaagaGCU-------------ACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 62534 0.71 0.55603
Target:  5'- cCGCCUCCGACaccgucuacCUCGGUGuCAUCCa -3'
miRNA:   3'- cGUGGGGGCUGaa-------GAGCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 42526 0.71 0.566503
Target:  5'- uGCGCCCCCGgcauccACUUCUUcau--CACCCg -3'
miRNA:   3'- -CGUGGGGGC------UGAAGAGcuacuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 50847 0.71 0.577026
Target:  5'- gGCGgCUCgGACUUgCUCGAUGGuCAUCCc -3'
miRNA:   3'- -CGUgGGGgCUGAA-GAGCUACU-GUGGG- -5'
18449 3' -54.8 NC_004681.1 + 7604 0.71 0.577026
Target:  5'- aCGCCCgCGACUUCgccgaCGAUGGCcagACCg -3'
miRNA:   3'- cGUGGGgGCUGAAGa----GCUACUG---UGGg -5'
18449 3' -54.8 NC_004681.1 + 16793 0.7 0.598192
Target:  5'- gGCAUCCCCGGCaugCcCGAgGAC-CCCu -3'
miRNA:   3'- -CGUGGGGGCUGaa-GaGCUaCUGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.