miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18449 3' -54.8 NC_004681.1 + 13378 0.7 0.619467
Target:  5'- gGCGCCCUCGGa--CUCGAUGGC-CUg -3'
miRNA:   3'- -CGUGGGGGCUgaaGAGCUACUGuGGg -5'
18449 3' -54.8 NC_004681.1 + 30866 0.7 0.640783
Target:  5'- cCGCCCgCCGACccgCUgGAgccccgcGACACCCu -3'
miRNA:   3'- cGUGGG-GGCUGaa-GAgCUa------CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 16054 0.7 0.647176
Target:  5'- gGCACaCCCCGAaugaacgaGAUGGCGCCa -3'
miRNA:   3'- -CGUG-GGGGCUgaagag--CUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 58878 0.7 0.651435
Target:  5'- cGCGCgCCUCGACggugCGcGUGACACCa -3'
miRNA:   3'- -CGUG-GGGGCUGaagaGC-UACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 7806 0.7 0.651435
Target:  5'- -gACUCCCGACcUCccCGAUGAgGCCg -3'
miRNA:   3'- cgUGGGGGCUGaAGa-GCUACUgUGGg -5'
18449 3' -54.8 NC_004681.1 + 24038 0.69 0.671619
Target:  5'- cCAUCCCCGAagcguuccagaaCUUCcuggacgccauugUCGGUGGCGCCg -3'
miRNA:   3'- cGUGGGGGCU------------GAAG-------------AGCUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 18099 0.69 0.672678
Target:  5'- gGCAUCCCCGGCa--UCG---GCGCCCc -3'
miRNA:   3'- -CGUGGGGGCUGaagAGCuacUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 3427 0.69 0.682195
Target:  5'- cGCGCgCaCgGACUaacacaaUCacuUCGGUGACGCCCg -3'
miRNA:   3'- -CGUGgG-GgCUGA-------AG---AGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 42415 0.69 0.693778
Target:  5'- gGCGCCCCCG---UCUCGucGGCGCgCa -3'
miRNA:   3'- -CGUGGGGGCugaAGAGCuaCUGUGgG- -5'
18449 3' -54.8 NC_004681.1 + 561 0.69 0.704249
Target:  5'- gGCGCCuCCCcACgaaCUCGGccagguugGACGCCCa -3'
miRNA:   3'- -CGUGG-GGGcUGaa-GAGCUa-------CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 44739 0.69 0.704249
Target:  5'- gGCGCCUUCGACg--UCGAgGACuCCCu -3'
miRNA:   3'- -CGUGGGGGCUGaagAGCUaCUGuGGG- -5'
18449 3' -54.8 NC_004681.1 + 5686 0.68 0.714655
Target:  5'- aGCGgCCaguuCGACUguugcgCUUGAUGGCgACCCg -3'
miRNA:   3'- -CGUgGGg---GCUGAa-----GAGCUACUG-UGGG- -5'
18449 3' -54.8 NC_004681.1 + 7324 0.68 0.724983
Target:  5'- cCACCCCCGGCacC-CGGggcUGAC-CCCg -3'
miRNA:   3'- cGUGGGGGCUGaaGaGCU---ACUGuGGG- -5'
18449 3' -54.8 NC_004681.1 + 37651 0.68 0.724984
Target:  5'- -gACCCCgGACUUCaag--GACAUCCa -3'
miRNA:   3'- cgUGGGGgCUGAAGagcuaCUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 6674 0.68 0.735225
Target:  5'- gGCGCCCuuGACggCgcgcaggugcuUCGGUGACgACUCc -3'
miRNA:   3'- -CGUGGGggCUGaaG-----------AGCUACUG-UGGG- -5'
18449 3' -54.8 NC_004681.1 + 66764 0.68 0.74537
Target:  5'- cCACCaCCCGGCccCUCGGguaccccccGAUGCCCa -3'
miRNA:   3'- cGUGG-GGGCUGaaGAGCUa--------CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 32171 0.68 0.74537
Target:  5'- -gGCCgggUCCaGCUUCUCGAgGACGCCUu -3'
miRNA:   3'- cgUGG---GGGcUGAAGAGCUaCUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 18474 0.68 0.74537
Target:  5'- cCGCCgCCUGGCcugccaUgUCGAUGGCGCCa -3'
miRNA:   3'- cGUGG-GGGCUGa-----AgAGCUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 16473 0.68 0.755407
Target:  5'- aGC-CCCCCacgGACUaCUCGgcGccGCGCCCc -3'
miRNA:   3'- -CGuGGGGG---CUGAaGAGCuaC--UGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 29028 0.68 0.755408
Target:  5'- uGCGUCaCCGGCgUUC-CGAUGGCGCCUa -3'
miRNA:   3'- -CGUGGgGGCUG-AAGaGCUACUGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.