miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18449 3' -54.8 NC_004681.1 + 561 0.69 0.704249
Target:  5'- gGCGCCuCCCcACgaaCUCGGccagguugGACGCCCa -3'
miRNA:   3'- -CGUGG-GGGcUGaa-GAGCUa-------CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 629 0.66 0.863811
Target:  5'- cGCGCCUUCGGCccggUGAUcGACGCCg -3'
miRNA:   3'- -CGUGGGGGCUGaagaGCUA-CUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 709 0.72 0.514771
Target:  5'- gGCGCggaggaaguUCUCGACggCgUCGAUGGCGCCCu -3'
miRNA:   3'- -CGUG---------GGGGCUGaaG-AGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 1267 0.79 0.197826
Target:  5'- -gGCCCCCGACaUgUCGGagGGCGCCCa -3'
miRNA:   3'- cgUGGGGGCUGaAgAGCUa-CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 1366 0.68 0.765327
Target:  5'- gGCGCCCuCCGACaUgUCGggGGCcacgaguuCCCc -3'
miRNA:   3'- -CGUGGG-GGCUGaAgAGCuaCUGu-------GGG- -5'
18449 3' -54.8 NC_004681.1 + 2300 0.67 0.803618
Target:  5'- aCACCCUCGAUgacaUCGAauGCACCg -3'
miRNA:   3'- cGUGGGGGCUGaag-AGCUacUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 2707 0.72 0.524978
Target:  5'- -aAUCCCCGACU--UgGAUGuCACCCa -3'
miRNA:   3'- cgUGGGGGCUGAagAgCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 3427 0.69 0.682195
Target:  5'- cGCGCgCaCgGACUaacacaaUCacuUCGGUGACGCCCg -3'
miRNA:   3'- -CGUGgG-GgCUGA-------AG---AGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 5539 0.74 0.408898
Target:  5'- gGUACCCCCGagaaGCUgaugC-CGAUG-CACCCg -3'
miRNA:   3'- -CGUGGGGGC----UGAa---GaGCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 5686 0.68 0.714655
Target:  5'- aGCGgCCaguuCGACUguugcgCUUGAUGGCgACCCg -3'
miRNA:   3'- -CGUgGGg---GCUGAa-----GAGCUACUG-UGGG- -5'
18449 3' -54.8 NC_004681.1 + 6473 0.66 0.863811
Target:  5'- --cCCCUCGACagcgccaUCGGgcgUGGCGCCCa -3'
miRNA:   3'- cguGGGGGCUGaag----AGCU---ACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 6674 0.68 0.735225
Target:  5'- gGCGCCCuuGACggCgcgcaggugcuUCGGUGACgACUCc -3'
miRNA:   3'- -CGUGGGggCUGaaG-----------AGCUACUG-UGGG- -5'
18449 3' -54.8 NC_004681.1 + 7324 0.68 0.724983
Target:  5'- cCACCCCCGGCacC-CGGggcUGAC-CCCg -3'
miRNA:   3'- cGUGGGGGCUGaaGaGCU---ACUGuGGG- -5'
18449 3' -54.8 NC_004681.1 + 7604 0.71 0.577026
Target:  5'- aCGCCCgCGACUUCgccgaCGAUGGCcagACCg -3'
miRNA:   3'- cGUGGGgGCUGAAGa----GCUACUG---UGGg -5'
18449 3' -54.8 NC_004681.1 + 7806 0.7 0.651435
Target:  5'- -gACUCCCGACcUCccCGAUGAgGCCg -3'
miRNA:   3'- cgUGGGGGCUGaAGa-GCUACUgUGGg -5'
18449 3' -54.8 NC_004681.1 + 12220 0.67 0.81006
Target:  5'- cGCAUCCCCGguggcccguucuggGCUgagUCGG-GugGCCCg -3'
miRNA:   3'- -CGUGGGGGC--------------UGAag-AGCUaCugUGGG- -5'
18449 3' -54.8 NC_004681.1 + 13378 0.7 0.619467
Target:  5'- gGCGCCCUCGGa--CUCGAUGGC-CUg -3'
miRNA:   3'- -CGUGGGGGCUgaaGAGCUACUGuGGg -5'
18449 3' -54.8 NC_004681.1 + 16054 0.7 0.647176
Target:  5'- gGCACaCCCCGAaugaacgaGAUGGCGCCa -3'
miRNA:   3'- -CGUG-GGGGCUgaagag--CUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 16473 0.68 0.755407
Target:  5'- aGC-CCCCCacgGACUaCUCGgcGccGCGCCCc -3'
miRNA:   3'- -CGuGGGGG---CUGAaGAGCuaC--UGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 16793 0.7 0.598192
Target:  5'- gGCAUCCCCGGCaugCcCGAgGAC-CCCu -3'
miRNA:   3'- -CGUGGGGGCUGaa-GaGCUaCUGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.