Results 61 - 66 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18449 | 3' | -54.8 | NC_004681.1 | + | 62210 | 0.66 | 0.830605 |
|
Target: 5'- uGCGCUCguccaCCGACUgcagCagGAUGcCGCCCa -3' miRNA: 3'- -CGUGGG-----GGCUGAa---GagCUACuGUGGG- -5' |
|||||||
| 18449 | 3' | -54.8 | NC_004681.1 | + | 62534 | 0.71 | 0.55603 |
|
Target: 5'- cCGCCUCCGACaccgucuacCUCGGUGuCAUCCa -3' miRNA: 3'- cGUGGGGGCUGaa-------GAGCUACuGUGGG- -5' |
|||||||
| 18449 | 3' | -54.8 | NC_004681.1 | + | 62665 | 0.8 | 0.182969 |
|
Target: 5'- cGCGCUCCCGGCguuccaUCUCcugGAUGACACCg -3' miRNA: 3'- -CGUGGGGGCUGa-----AGAG---CUACUGUGGg -5' |
|||||||
| 18449 | 3' | -54.8 | NC_004681.1 | + | 62947 | 0.66 | 0.847632 |
|
Target: 5'- cGCGguccUUCUCGGCgcgCUCGGUG-CGCCCc -3' miRNA: 3'- -CGU----GGGGGCUGaa-GAGCUACuGUGGG- -5' |
|||||||
| 18449 | 3' | -54.8 | NC_004681.1 | + | 66764 | 0.68 | 0.74537 |
|
Target: 5'- cCACCaCCCGGCccCUCGGguaccccccGAUGCCCa -3' miRNA: 3'- cGUGG-GGGCUGaaGAGCUa--------CUGUGGG- -5' |
|||||||
| 18449 | 3' | -54.8 | NC_004681.1 | + | 69047 | 0.66 | 0.821793 |
|
Target: 5'- cGCACCUgCGACac--CGAUGGCugCg -3' miRNA: 3'- -CGUGGGgGCUGaagaGCUACUGugGg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home