miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18449 3' -54.8 NC_004681.1 + 69047 0.66 0.821793
Target:  5'- cGCACCUgCGACac--CGAUGGCugCg -3'
miRNA:   3'- -CGUGGGgGCUGaagaGCUACUGugGg -5'
18449 3' -54.8 NC_004681.1 + 66764 0.68 0.74537
Target:  5'- cCACCaCCCGGCccCUCGGguaccccccGAUGCCCa -3'
miRNA:   3'- cGUGG-GGGCUGaaGAGCUa--------CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 62947 0.66 0.847632
Target:  5'- cGCGguccUUCUCGGCgcgCUCGGUG-CGCCCc -3'
miRNA:   3'- -CGU----GGGGGCUGaa-GAGCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 62665 0.8 0.182969
Target:  5'- cGCGCUCCCGGCguuccaUCUCcugGAUGACACCg -3'
miRNA:   3'- -CGUGGGGGCUGa-----AGAG---CUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 62534 0.71 0.55603
Target:  5'- cCGCCUCCGACaccgucuacCUCGGUGuCAUCCa -3'
miRNA:   3'- cGUGGGGGCUGaa-------GAGCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 62210 0.66 0.830605
Target:  5'- uGCGCUCguccaCCGACUgcagCagGAUGcCGCCCa -3'
miRNA:   3'- -CGUGGG-----GGCUGAa---GagCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 59565 0.66 0.821793
Target:  5'- uGCA-CCCgGGCUUCguaGcUGACGCCUc -3'
miRNA:   3'- -CGUgGGGgCUGAAGag-CuACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 59019 0.66 0.83922
Target:  5'- gGCGCCCaCCG-CgaaUUUGAccacGACACCCa -3'
miRNA:   3'- -CGUGGG-GGCuGaa-GAGCUa---CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 58878 0.7 0.651435
Target:  5'- cGCGCgCCUCGACggugCGcGUGACACCa -3'
miRNA:   3'- -CGUG-GGGGCUGaagaGC-UACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 58766 0.67 0.812794
Target:  5'- -gACCCCCGAUggugUCacgcgcaccgUCGAggcgcGCGCCCa -3'
miRNA:   3'- cgUGGGGGCUGa---AG----------AGCUac---UGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 54585 0.68 0.762364
Target:  5'- aGCugCCCCccgcaaucaucgugGACa--UCGAcGGCACCCu -3'
miRNA:   3'- -CGugGGGG--------------CUGaagAGCUaCUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 53502 0.66 0.821793
Target:  5'- gGCACCCauGACcg--CGGUGACAUCg -3'
miRNA:   3'- -CGUGGGggCUGaagaGCUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 53219 0.66 0.863811
Target:  5'- uCGCCUCCGcuaGCUcaggUgUCGAgUGGCACCUg -3'
miRNA:   3'- cGUGGGGGC---UGA----AgAGCU-ACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 51132 0.66 0.847632
Target:  5'- uCGCCgUCGcCgagggCGAUGACGCCCu -3'
miRNA:   3'- cGUGGgGGCuGaaga-GCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 50847 0.71 0.577026
Target:  5'- gGCGgCUCgGACUUgCUCGAUGGuCAUCCc -3'
miRNA:   3'- -CGUgGGGgCUGAA-GAGCUACU-GUGGG- -5'
18449 3' -54.8 NC_004681.1 + 50236 0.72 0.51477
Target:  5'- gGCGCCCUCGGCUUgUgGAUcaaGGCGCUg -3'
miRNA:   3'- -CGUGGGGGCUGAAgAgCUA---CUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 49116 0.68 0.755408
Target:  5'- gGCcUCCUCGccCUUCUUGAUGGUGCCCa -3'
miRNA:   3'- -CGuGGGGGCu-GAAGAGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 47218 0.67 0.812795
Target:  5'- cGCgGCCCUCGGCgUUCUCGu---CGCUCa -3'
miRNA:   3'- -CG-UGGGGGCUG-AAGAGCuacuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 46450 0.75 0.382449
Target:  5'- cCACCUCCaGACUggggC-CGAUGAUGCCCa -3'
miRNA:   3'- cGUGGGGG-CUGAa---GaGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 45297 0.76 0.302843
Target:  5'- uCAUCCCCGGugaUUCUCGAUGGCGCg- -3'
miRNA:   3'- cGUGGGGGCUg--AAGAGCUACUGUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.