miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18449 3' -54.8 NC_004681.1 + 44989 0.66 0.847632
Target:  5'- uGCAUCCUCGGC--CUCG-UGGgcguCGCCCg -3'
miRNA:   3'- -CGUGGGGGCUGaaGAGCuACU----GUGGG- -5'
18449 3' -54.8 NC_004681.1 + 44739 0.69 0.704249
Target:  5'- gGCGCCUUCGACg--UCGAgGACuCCCu -3'
miRNA:   3'- -CGUGGGGGCUGaagAGCUaCUGuGGG- -5'
18449 3' -54.8 NC_004681.1 + 42526 0.71 0.566503
Target:  5'- uGCGCCCCCGgcauccACUUCUUcau--CACCCg -3'
miRNA:   3'- -CGUGGGGGC------UGAAGAGcuacuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 42415 0.69 0.693778
Target:  5'- gGCGCCCCCG---UCUCGucGGCGCgCa -3'
miRNA:   3'- -CGUGGGGGCugaAGAGCuaCUGUGgG- -5'
18449 3' -54.8 NC_004681.1 + 40109 0.74 0.417965
Target:  5'- uGCACCCCgGGggUCgccaggUCGGUGAcCGCCCg -3'
miRNA:   3'- -CGUGGGGgCUgaAG------AGCUACU-GUGGG- -5'
18449 3' -54.8 NC_004681.1 + 39261 0.67 0.811885
Target:  5'- cGCGgCCCgGAUgccggUCUCGGUGaacagcacgaugaGCGCCUu -3'
miRNA:   3'- -CGUgGGGgCUGa----AGAGCUAC-------------UGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 37651 0.68 0.724984
Target:  5'- -gACCCCgGACUUCaag--GACAUCCa -3'
miRNA:   3'- cgUGGGGgCUGAAGagcuaCUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 37517 1.14 0.000922
Target:  5'- aGCACCCCCGACUUCUCGAUGACACCCu -3'
miRNA:   3'- -CGUGGGGGCUGAAGAGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 35389 0.67 0.78477
Target:  5'- cCACCgguggCCgGAUUcCUCGAcgGGCACCCa -3'
miRNA:   3'- cGUGG-----GGgCUGAaGAGCUa-CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 35230 0.72 0.494606
Target:  5'- uGguCgCUCGACUUCUCGG-GGCGCCUc -3'
miRNA:   3'- -CguGgGGGCUGAAGAGCUaCUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 34412 0.67 0.803618
Target:  5'- uGCACCCuuGGCgcaggUCgccaUGAUGcCAUCCc -3'
miRNA:   3'- -CGUGGGggCUGa----AGa---GCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 33628 0.73 0.454459
Target:  5'- -gACCCuuGACggUCUCGAUGGCcuucaccGCCUg -3'
miRNA:   3'- cgUGGGggCUGa-AGAGCUACUG-------UGGG- -5'
18449 3' -54.8 NC_004681.1 + 33385 0.77 0.261532
Target:  5'- gGCGCgaCCGGCg--UCGAUGACACCCg -3'
miRNA:   3'- -CGUGggGGCUGaagAGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 32171 0.68 0.74537
Target:  5'- -gGCCgggUCCaGCUUCUCGAgGACGCCUu -3'
miRNA:   3'- cgUGG---GGGcUGAAGAGCUaCUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 30866 0.7 0.640783
Target:  5'- cCGCCCgCCGACccgCUgGAgccccgcGACACCCu -3'
miRNA:   3'- cGUGGG-GGCUGaa-GAgCUa------CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 29028 0.68 0.755408
Target:  5'- uGCGUCaCCGGCgUUC-CGAUGGCGCCUa -3'
miRNA:   3'- -CGUGGgGGCUG-AAGaGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 24970 0.66 0.863811
Target:  5'- uCACCCCCGGCgacgggggCUCuGgcGGCACa- -3'
miRNA:   3'- cGUGGGGGCUGaa------GAG-CuaCUGUGgg -5'
18449 3' -54.8 NC_004681.1 + 24038 0.69 0.671619
Target:  5'- cCAUCCCCGAagcguuccagaaCUUCcuggacgccauugUCGGUGGCGCCg -3'
miRNA:   3'- cGUGGGGGCU------------GAAG-------------AGCUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 22670 0.71 0.544575
Target:  5'- cGCAUCCCCGGCac--CGAccagcccaaggagUGGCGCCCc -3'
miRNA:   3'- -CGUGGGGGCUGaagaGCU-------------ACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 22606 0.66 0.863811
Target:  5'- cGUGCCCaCCucCUUCUCcacgGACACCg -3'
miRNA:   3'- -CGUGGG-GGcuGAAGAGcua-CUGUGGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.