Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 44989 | 0.66 | 0.847632 |
Target: 5'- uGCAUCCUCGGC--CUCG-UGGgcguCGCCCg -3' miRNA: 3'- -CGUGGGGGCUGaaGAGCuACU----GUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 44739 | 0.69 | 0.704249 |
Target: 5'- gGCGCCUUCGACg--UCGAgGACuCCCu -3' miRNA: 3'- -CGUGGGGGCUGaagAGCUaCUGuGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 42526 | 0.71 | 0.566503 |
Target: 5'- uGCGCCCCCGgcauccACUUCUUcau--CACCCg -3' miRNA: 3'- -CGUGGGGGC------UGAAGAGcuacuGUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 42415 | 0.69 | 0.693778 |
Target: 5'- gGCGCCCCCG---UCUCGucGGCGCgCa -3' miRNA: 3'- -CGUGGGGGCugaAGAGCuaCUGUGgG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 40109 | 0.74 | 0.417965 |
Target: 5'- uGCACCCCgGGggUCgccaggUCGGUGAcCGCCCg -3' miRNA: 3'- -CGUGGGGgCUgaAG------AGCUACU-GUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 39261 | 0.67 | 0.811885 |
Target: 5'- cGCGgCCCgGAUgccggUCUCGGUGaacagcacgaugaGCGCCUu -3' miRNA: 3'- -CGUgGGGgCUGa----AGAGCUAC-------------UGUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 37651 | 0.68 | 0.724984 |
Target: 5'- -gACCCCgGACUUCaag--GACAUCCa -3' miRNA: 3'- cgUGGGGgCUGAAGagcuaCUGUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 37517 | 1.14 | 0.000922 |
Target: 5'- aGCACCCCCGACUUCUCGAUGACACCCu -3' miRNA: 3'- -CGUGGGGGCUGAAGAGCUACUGUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 35389 | 0.67 | 0.78477 |
Target: 5'- cCACCgguggCCgGAUUcCUCGAcgGGCACCCa -3' miRNA: 3'- cGUGG-----GGgCUGAaGAGCUa-CUGUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 35230 | 0.72 | 0.494606 |
Target: 5'- uGguCgCUCGACUUCUCGG-GGCGCCUc -3' miRNA: 3'- -CguGgGGGCUGAAGAGCUaCUGUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 34412 | 0.67 | 0.803618 |
Target: 5'- uGCACCCuuGGCgcaggUCgccaUGAUGcCAUCCc -3' miRNA: 3'- -CGUGGGggCUGa----AGa---GCUACuGUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 33628 | 0.73 | 0.454459 |
Target: 5'- -gACCCuuGACggUCUCGAUGGCcuucaccGCCUg -3' miRNA: 3'- cgUGGGggCUGa-AGAGCUACUG-------UGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 33385 | 0.77 | 0.261532 |
Target: 5'- gGCGCgaCCGGCg--UCGAUGACACCCg -3' miRNA: 3'- -CGUGggGGCUGaagAGCUACUGUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 32171 | 0.68 | 0.74537 |
Target: 5'- -gGCCgggUCCaGCUUCUCGAgGACGCCUu -3' miRNA: 3'- cgUGG---GGGcUGAAGAGCUaCUGUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 30866 | 0.7 | 0.640783 |
Target: 5'- cCGCCCgCCGACccgCUgGAgccccgcGACACCCu -3' miRNA: 3'- cGUGGG-GGCUGaa-GAgCUa------CUGUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 29028 | 0.68 | 0.755408 |
Target: 5'- uGCGUCaCCGGCgUUC-CGAUGGCGCCUa -3' miRNA: 3'- -CGUGGgGGCUG-AAGaGCUACUGUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 24970 | 0.66 | 0.863811 |
Target: 5'- uCACCCCCGGCgacgggggCUCuGgcGGCACa- -3' miRNA: 3'- cGUGGGGGCUGaa------GAG-CuaCUGUGgg -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 24038 | 0.69 | 0.671619 |
Target: 5'- cCAUCCCCGAagcguuccagaaCUUCcuggacgccauugUCGGUGGCGCCg -3' miRNA: 3'- cGUGGGGGCU------------GAAG-------------AGCUACUGUGGg -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 22670 | 0.71 | 0.544575 |
Target: 5'- cGCAUCCCCGGCac--CGAccagcccaaggagUGGCGCCCc -3' miRNA: 3'- -CGUGGGGGCUGaagaGCU-------------ACUGUGGG- -5' |
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18449 | 3' | -54.8 | NC_004681.1 | + | 22606 | 0.66 | 0.863811 |
Target: 5'- cGUGCCCaCCucCUUCUCcacgGACACCg -3' miRNA: 3'- -CGUGGG-GGcuGAAGAGcua-CUGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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