miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18449 3' -54.8 NC_004681.1 + 16473 0.68 0.755407
Target:  5'- aGC-CCCCCacgGACUaCUCGgcGccGCGCCCc -3'
miRNA:   3'- -CGuGGGGG---CUGAaGAGCuaC--UGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 30866 0.7 0.640783
Target:  5'- cCGCCCgCCGACccgCUgGAgccccgcGACACCCu -3'
miRNA:   3'- cGUGGG-GGCUGaa-GAgCUa------CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 7806 0.7 0.651435
Target:  5'- -gACUCCCGACcUCccCGAUGAgGCCg -3'
miRNA:   3'- cgUGGGGGCUGaAGa-GCUACUgUGGg -5'
18449 3' -54.8 NC_004681.1 + 24038 0.69 0.671619
Target:  5'- cCAUCCCCGAagcguuccagaaCUUCcuggacgccauugUCGGUGGCGCCg -3'
miRNA:   3'- cGUGGGGGCU------------GAAG-------------AGCUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 18099 0.69 0.672678
Target:  5'- gGCAUCCCCGGCa--UCG---GCGCCCc -3'
miRNA:   3'- -CGUGGGGGCUGaagAGCuacUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 3427 0.69 0.682195
Target:  5'- cGCGCgCaCgGACUaacacaaUCacuUCGGUGACGCCCg -3'
miRNA:   3'- -CGUGgG-GgCUGA-------AG---AGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 42415 0.69 0.693778
Target:  5'- gGCGCCCCCG---UCUCGucGGCGCgCa -3'
miRNA:   3'- -CGUGGGGGCugaAGAGCuaCUGUGgG- -5'
18449 3' -54.8 NC_004681.1 + 44739 0.69 0.704249
Target:  5'- gGCGCCUUCGACg--UCGAgGACuCCCu -3'
miRNA:   3'- -CGUGGGGGCUGaagAGCUaCUGuGGG- -5'
18449 3' -54.8 NC_004681.1 + 7324 0.68 0.724983
Target:  5'- cCACCCCCGGCacC-CGGggcUGAC-CCCg -3'
miRNA:   3'- cGUGGGGGCUGaaGaGCU---ACUGuGGG- -5'
18449 3' -54.8 NC_004681.1 + 16793 0.7 0.598192
Target:  5'- gGCAUCCCCGGCaugCcCGAgGAC-CCCu -3'
miRNA:   3'- -CGUGGGGGCUGaa-GaGCUaCUGuGGG- -5'
18449 3' -54.8 NC_004681.1 + 7604 0.71 0.577026
Target:  5'- aCGCCCgCGACUUCgccgaCGAUGGCcagACCg -3'
miRNA:   3'- cGUGGGgGCUGAAGa----GCUACUG---UGGg -5'
18449 3' -54.8 NC_004681.1 + 42526 0.71 0.566503
Target:  5'- uGCGCCCCCGgcauccACUUCUUcau--CACCCg -3'
miRNA:   3'- -CGUGGGGGC------UGAAGAGcuacuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 20164 0.86 0.079006
Target:  5'- cGCugCCCCGGCUgcgCUCGGUGAucgacuuguCGCCCa -3'
miRNA:   3'- -CGugGGGGCUGAa--GAGCUACU---------GUGGG- -5'
18449 3' -54.8 NC_004681.1 + 1267 0.79 0.197826
Target:  5'- -gGCCCCCGACaUgUCGGagGGCGCCCa -3'
miRNA:   3'- cgUGGGGGCUGaAgAGCUa-CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 5539 0.74 0.408898
Target:  5'- gGUACCCCCGagaaGCUgaugC-CGAUG-CACCCg -3'
miRNA:   3'- -CGUGGGGGC----UGAa---GaGCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 40109 0.74 0.417965
Target:  5'- uGCACCCCgGGggUCgccaggUCGGUGAcCGCCCg -3'
miRNA:   3'- -CGUGGGGgCUgaAG------AGCUACU-GUGGG- -5'
18449 3' -54.8 NC_004681.1 + 35230 0.72 0.494606
Target:  5'- uGguCgCUCGACUUCUCGG-GGCGCCUc -3'
miRNA:   3'- -CguGgGGGCUGAAGAGCUaCUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 50236 0.72 0.51477
Target:  5'- gGCGCCCUCGGCUUgUgGAUcaaGGCGCUg -3'
miRNA:   3'- -CGUGGGGGCUGAAgAgCUA---CUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 22670 0.71 0.544575
Target:  5'- cGCAUCCCCGGCac--CGAccagcccaaggagUGGCGCCCc -3'
miRNA:   3'- -CGUGGGGGCUGaagaGCU-------------ACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 62534 0.71 0.55603
Target:  5'- cCGCCUCCGACaccgucuacCUCGGUGuCAUCCa -3'
miRNA:   3'- cGUGGGGGCUGaa-------GAGCUACuGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.