miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18449 3' -54.8 NC_004681.1 + 62665 0.8 0.182969
Target:  5'- cGCGCUCCCGGCguuccaUCUCcugGAUGACACCg -3'
miRNA:   3'- -CGUGGGGGCUGa-----AGAG---CUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 18474 0.68 0.74537
Target:  5'- cCGCCgCCUGGCcugccaUgUCGAUGGCGCCa -3'
miRNA:   3'- cGUGG-GGGCUGa-----AgAGCUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 49116 0.68 0.755408
Target:  5'- gGCcUCCUCGccCUUCUUGAUGGUGCCCa -3'
miRNA:   3'- -CGuGGGGGCu-GAAGAGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 6473 0.66 0.863811
Target:  5'- --cCCCUCGACagcgccaUCGGgcgUGGCGCCCa -3'
miRNA:   3'- cguGGGGGCUGaag----AGCU---ACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 33628 0.73 0.454459
Target:  5'- -gACCCuuGACggUCUCGAUGGCcuucaccGCCUg -3'
miRNA:   3'- cgUGGGggCUGa-AGAGCUACUG-------UGGG- -5'
18449 3' -54.8 NC_004681.1 + 709 0.72 0.514771
Target:  5'- gGCGCggaggaaguUCUCGACggCgUCGAUGGCGCCCu -3'
miRNA:   3'- -CGUG---------GGGGCUGaaG-AGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 50847 0.71 0.577026
Target:  5'- gGCGgCUCgGACUUgCUCGAUGGuCAUCCc -3'
miRNA:   3'- -CGUgGGGgCUGAA-GAGCUACU-GUGGG- -5'
18449 3' -54.8 NC_004681.1 + 13378 0.7 0.619467
Target:  5'- gGCGCCCUCGGa--CUCGAUGGC-CUg -3'
miRNA:   3'- -CGUGGGGGCUgaaGAGCUACUGuGGg -5'
18449 3' -54.8 NC_004681.1 + 561 0.69 0.704249
Target:  5'- gGCGCCuCCCcACgaaCUCGGccagguugGACGCCCa -3'
miRNA:   3'- -CGUGG-GGGcUGaa-GAGCUa-------CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 32171 0.68 0.74537
Target:  5'- -gGCCgggUCCaGCUUCUCGAgGACGCCUu -3'
miRNA:   3'- cgUGG---GGGcUGAAGAGCUaCUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 37651 0.68 0.724984
Target:  5'- -gACCCCgGACUUCaag--GACAUCCa -3'
miRNA:   3'- cgUGGGGgCUGAAGagcuaCUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 58878 0.7 0.651435
Target:  5'- cGCGCgCCUCGACggugCGcGUGACACCa -3'
miRNA:   3'- -CGUG-GGGGCUGaagaGC-UACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 33385 0.77 0.261532
Target:  5'- gGCGCgaCCGGCg--UCGAUGACACCCg -3'
miRNA:   3'- -CGUGggGGCUGaagAGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 6674 0.68 0.735225
Target:  5'- gGCGCCCuuGACggCgcgcaggugcuUCGGUGACgACUCc -3'
miRNA:   3'- -CGUGGGggCUGaaG-----------AGCUACUG-UGGG- -5'
18449 3' -54.8 NC_004681.1 + 45297 0.76 0.302843
Target:  5'- uCAUCCCCGGugaUUCUCGAUGGCGCg- -3'
miRNA:   3'- cGUGGGGGCUg--AAGAGCUACUGUGgg -5'
18449 3' -54.8 NC_004681.1 + 16054 0.7 0.647176
Target:  5'- gGCACaCCCCGAaugaacgaGAUGGCGCCa -3'
miRNA:   3'- -CGUG-GGGGCUgaagag--CUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 66764 0.68 0.74537
Target:  5'- cCACCaCCCGGCccCUCGGguaccccccGAUGCCCa -3'
miRNA:   3'- cGUGG-GGGCUGaaGAGCUa--------CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 29028 0.68 0.755408
Target:  5'- uGCGUCaCCGGCgUUC-CGAUGGCGCCUa -3'
miRNA:   3'- -CGUGGgGGCUG-AAGaGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 46450 0.75 0.382449
Target:  5'- cCACCUCCaGACUggggC-CGAUGAUGCCCa -3'
miRNA:   3'- cGUGGGGG-CUGAa---GaGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 2707 0.72 0.524978
Target:  5'- -aAUCCCCGACU--UgGAUGuCACCCa -3'
miRNA:   3'- cgUGGGGGCUGAagAgCUACuGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.