miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18449 3' -54.8 NC_004681.1 + 62947 0.66 0.847632
Target:  5'- cGCGguccUUCUCGGCgcgCUCGGUG-CGCCCc -3'
miRNA:   3'- -CGU----GGGGGCUGaa-GAGCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 49116 0.68 0.755408
Target:  5'- gGCcUCCUCGccCUUCUUGAUGGUGCCCa -3'
miRNA:   3'- -CGuGGGGGCu-GAAGAGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 2707 0.72 0.524978
Target:  5'- -aAUCCCCGACU--UgGAUGuCACCCa -3'
miRNA:   3'- cgUGGGGGCUGAagAgCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 59565 0.66 0.821793
Target:  5'- uGCA-CCCgGGCUUCguaGcUGACGCCUc -3'
miRNA:   3'- -CGUgGGGgCUGAAGag-CuACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 6473 0.66 0.863811
Target:  5'- --cCCCUCGACagcgccaUCGGgcgUGGCGCCCa -3'
miRNA:   3'- cguGGGGGCUGaag----AGCU---ACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 51132 0.66 0.847632
Target:  5'- uCGCCgUCGcCgagggCGAUGACGCCCu -3'
miRNA:   3'- cGUGGgGGCuGaaga-GCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 709 0.72 0.514771
Target:  5'- gGCGCggaggaaguUCUCGACggCgUCGAUGGCGCCCu -3'
miRNA:   3'- -CGUG---------GGGGCUGaaG-AGCUACUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 33628 0.73 0.454459
Target:  5'- -gACCCuuGACggUCUCGAUGGCcuucaccGCCUg -3'
miRNA:   3'- cgUGGGggCUGa-AGAGCUACUG-------UGGG- -5'
18449 3' -54.8 NC_004681.1 + 1366 0.68 0.765327
Target:  5'- gGCGCCCuCCGACaUgUCGggGGCcacgaguuCCCc -3'
miRNA:   3'- -CGUGGG-GGCUGaAgAGCuaCUGu-------GGG- -5'
18449 3' -54.8 NC_004681.1 + 50236 0.72 0.51477
Target:  5'- gGCGCCCUCGGCUUgUgGAUcaaGGCGCUg -3'
miRNA:   3'- -CGUGGGGGCUGAAgAgCUA---CUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 69047 0.66 0.821793
Target:  5'- cGCACCUgCGACac--CGAUGGCugCg -3'
miRNA:   3'- -CGUGGGgGCUGaagaGCUACUGugGg -5'
18449 3' -54.8 NC_004681.1 + 24038 0.69 0.671619
Target:  5'- cCAUCCCCGAagcguuccagaaCUUCcuggacgccauugUCGGUGGCGCCg -3'
miRNA:   3'- cGUGGGGGCU------------GAAG-------------AGCUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 7806 0.7 0.651435
Target:  5'- -gACUCCCGACcUCccCGAUGAgGCCg -3'
miRNA:   3'- cgUGGGGGCUGaAGa-GCUACUgUGGg -5'
18449 3' -54.8 NC_004681.1 + 30866 0.7 0.640783
Target:  5'- cCGCCCgCCGACccgCUgGAgccccgcGACACCCu -3'
miRNA:   3'- cGUGGG-GGCUGaa-GAgCUa------CUGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 2300 0.67 0.803618
Target:  5'- aCACCCUCGAUgacaUCGAauGCACCg -3'
miRNA:   3'- cGUGGGGGCUGaag-AGCUacUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 34412 0.67 0.803618
Target:  5'- uGCACCCuuGGCgcaggUCgccaUGAUGcCAUCCc -3'
miRNA:   3'- -CGUGGGggCUGa----AGa---GCUACuGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 12220 0.67 0.81006
Target:  5'- cGCAUCCCCGguggcccguucuggGCUgagUCGG-GugGCCCg -3'
miRNA:   3'- -CGUGGGGGC--------------UGAag-AGCUaCugUGGG- -5'
18449 3' -54.8 NC_004681.1 + 58766 0.67 0.812794
Target:  5'- -gACCCCCGAUggugUCacgcgcaccgUCGAggcgcGCGCCCa -3'
miRNA:   3'- cgUGGGGGCUGa---AG----------AGCUac---UGUGGG- -5'
18449 3' -54.8 NC_004681.1 + 17557 0.66 0.821793
Target:  5'- gGCACCCCCuucaACUggggCaGUGACGCCg -3'
miRNA:   3'- -CGUGGGGGc---UGAaga-GcUACUGUGGg -5'
18449 3' -54.8 NC_004681.1 + 53502 0.66 0.821793
Target:  5'- gGCACCCauGACcg--CGGUGACAUCg -3'
miRNA:   3'- -CGUGGGggCUGaagaGCUACUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.