Results 41 - 60 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 1267 | 0.79 | 0.197826 |
Target: 5'- -gGCCCCCGACaUgUCGGagGGCGCCCa -3' miRNA: 3'- cgUGGGGGCUGaAgAGCUa-CUGUGGG- -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 3427 | 0.69 | 0.682195 |
Target: 5'- cGCGCgCaCgGACUaacacaaUCacuUCGGUGACGCCCg -3' miRNA: 3'- -CGUGgG-GgCUGA-------AG---AGCUACUGUGGG- -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 42415 | 0.69 | 0.693778 |
Target: 5'- gGCGCCCCCG---UCUCGucGGCGCgCa -3' miRNA: 3'- -CGUGGGGGCugaAGAGCuaCUGUGgG- -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 44739 | 0.69 | 0.704249 |
Target: 5'- gGCGCCUUCGACg--UCGAgGACuCCCu -3' miRNA: 3'- -CGUGGGGGCUGaagAGCUaCUGuGGG- -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 12220 | 0.67 | 0.81006 |
Target: 5'- cGCAUCCCCGguggcccguucuggGCUgagUCGG-GugGCCCg -3' miRNA: 3'- -CGUGGGGGC--------------UGAag-AGCUaCugUGGG- -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 58766 | 0.67 | 0.812794 |
Target: 5'- -gACCCCCGAUggugUCacgcgcaccgUCGAggcgcGCGCCCa -3' miRNA: 3'- cgUGGGGGCUGa---AG----------AGCUac---UGUGGG- -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 17557 | 0.66 | 0.821793 |
Target: 5'- gGCACCCCCuucaACUggggCaGUGACGCCg -3' miRNA: 3'- -CGUGGGGGc---UGAaga-GcUACUGUGGg -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 53502 | 0.66 | 0.821793 |
Target: 5'- gGCACCCauGACcg--CGGUGACAUCg -3' miRNA: 3'- -CGUGGGggCUGaagaGCUACUGUGGg -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 69047 | 0.66 | 0.821793 |
Target: 5'- cGCACCUgCGACac--CGAUGGCugCg -3' miRNA: 3'- -CGUGGGgGCUGaagaGCUACUGugGg -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 35389 | 0.67 | 0.78477 |
Target: 5'- cCACCgguggCCgGAUUcCUCGAcgGGCACCCa -3' miRNA: 3'- cGUGG-----GGgCUGAaGAGCUa-CUGUGGG- -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 59019 | 0.66 | 0.83922 |
Target: 5'- gGCGCCCaCCG-CgaaUUUGAccacGACACCCa -3' miRNA: 3'- -CGUGGG-GGCuGaa-GAGCUa---CUGUGGG- -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 44989 | 0.66 | 0.847632 |
Target: 5'- uGCAUCCUCGGC--CUCG-UGGgcguCGCCCg -3' miRNA: 3'- -CGUGGGGGCUGaaGAGCuACU----GUGGG- -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 24970 | 0.66 | 0.863811 |
Target: 5'- uCACCCCCGGCgacgggggCUCuGgcGGCACa- -3' miRNA: 3'- cGUGGGGGCUGaa------GAG-CuaCUGUGgg -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 22606 | 0.66 | 0.863811 |
Target: 5'- cGUGCCCaCCucCUUCUCcacgGACACCg -3' miRNA: 3'- -CGUGGG-GGcuGAAGAGcua-CUGUGGg -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 629 | 0.66 | 0.863811 |
Target: 5'- cGCGCCUUCGGCccggUGAUcGACGCCg -3' miRNA: 3'- -CGUGGGGGCUGaagaGCUA-CUGUGGg -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 53219 | 0.66 | 0.863811 |
Target: 5'- uCGCCUCCGcuaGCUcaggUgUCGAgUGGCACCUg -3' miRNA: 3'- cGUGGGGGC---UGA----AgAGCU-ACUGUGGG- -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 2300 | 0.67 | 0.803618 |
Target: 5'- aCACCCUCGAUgacaUCGAauGCACCg -3' miRNA: 3'- cGUGGGGGCUGaag-AGCUacUGUGGg -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 54585 | 0.68 | 0.762364 |
Target: 5'- aGCugCCCCccgcaaucaucgugGACa--UCGAcGGCACCCu -3' miRNA: 3'- -CGugGGGG--------------CUGaagAGCUaCUGUGGG- -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 16473 | 0.68 | 0.755407 |
Target: 5'- aGC-CCCCCacgGACUaCUCGgcGccGCGCCCc -3' miRNA: 3'- -CGuGGGGG---CUGAaGAGCuaC--UGUGGG- -5' |
|||||||
18449 | 3' | -54.8 | NC_004681.1 | + | 7324 | 0.68 | 0.724983 |
Target: 5'- cCACCCCCGGCacC-CGGggcUGAC-CCCg -3' miRNA: 3'- cGUGGGGGCUGaaGaGCU---ACUGuGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home