miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18450 3' -64.1 NC_004681.1 + 18745 0.66 0.358378
Target:  5'- uGAGGGUUcUCCucgGGCUUCaGGGgUGGCg -3'
miRNA:   3'- -CUCCCGGuAGG---CCGGAGcCCCgACUG- -5'
18450 3' -64.1 NC_004681.1 + 2968 0.66 0.341983
Target:  5'- gGGGGGCUucGUCaCGgucgagcGCCUCGGGGacggUGACc -3'
miRNA:   3'- -CUCCCGG--UAG-GC-------CGGAGCCCCg---ACUG- -5'
18450 3' -64.1 NC_004681.1 + 75547 0.66 0.335124
Target:  5'- cGAGGGCUGUCCgcauaGGCa-CGuGGGCUG-Cg -3'
miRNA:   3'- -CUCCCGGUAGG-----CCGgaGC-CCCGACuG- -5'
18450 3' -64.1 NC_004681.1 + 60539 0.67 0.317328
Target:  5'- -cGGGCCGaaggguagucacgCCGcacGCCUCGGGccGCUGGCc -3'
miRNA:   3'- cuCCCGGUa------------GGC---CGGAGCCC--CGACUG- -5'
18450 3' -64.1 NC_004681.1 + 7476 0.68 0.259455
Target:  5'- cGGGGGCUucuUCuCGGCCgCGGGcUUGGCg -3'
miRNA:   3'- -CUCCCGGu--AG-GCCGGaGCCCcGACUG- -5'
18450 3' -64.1 NC_004681.1 + 53883 0.7 0.182136
Target:  5'- uGGGGGCUGUCUGGCCaUCGcaguagucguacuGGCUGAUa -3'
miRNA:   3'- -CUCCCGGUAGGCCGG-AGCc------------CCGACUG- -5'
18450 3' -64.1 NC_004681.1 + 5943 0.72 0.12857
Target:  5'- cAGGcGCUG-CUGaGCCUCGGGGCUGAg -3'
miRNA:   3'- cUCC-CGGUaGGC-CGGAGCCCCGACUg -5'
18450 3' -64.1 NC_004681.1 + 20477 0.73 0.118895
Target:  5'- -cGGGCCGucuUCCGGCUUCGGcGGgaUUGGCa -3'
miRNA:   3'- cuCCCGGU---AGGCCGGAGCC-CC--GACUG- -5'
18450 3' -64.1 NC_004681.1 + 53848 0.75 0.07578
Target:  5'- gGAGGGCCAUgCGGaCUgGGGGgUGGCc -3'
miRNA:   3'- -CUCCCGGUAgGCCgGAgCCCCgACUG- -5'
18450 3' -64.1 NC_004681.1 + 44232 0.82 0.024817
Target:  5'- uGAGGGCCAggccCgCGGCCUCGGGGgUGAg -3'
miRNA:   3'- -CUCCCGGUa---G-GCCGGAGCCCCgACUg -5'
18450 3' -64.1 NC_004681.1 + 38044 1.08 0.000232
Target:  5'- cGAGGGCCAUCCGGCCUCGGGGCUGACu -3'
miRNA:   3'- -CUCCCGGUAGGCCGGAGCCCCGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.