miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18450 5' -55.5 NC_004681.1 + 30966 0.66 0.761028
Target:  5'- cGGgGCUCcaGCGGGUCgGCGggcGGCGUg -3'
miRNA:   3'- aCUgCGAG--CGUUCAGgCGUa--UCGCGa -5'
18450 5' -55.5 NC_004681.1 + 39941 0.66 0.750869
Target:  5'- uUGGCGCgCGCGggcgcGGUgCGCGcGGUGCg -3'
miRNA:   3'- -ACUGCGaGCGU-----UCAgGCGUaUCGCGa -5'
18450 5' -55.5 NC_004681.1 + 48238 0.66 0.740592
Target:  5'- cGAgGCUCGCcAGUCCG-AUAcGgGCa -3'
miRNA:   3'- aCUgCGAGCGuUCAGGCgUAU-CgCGa -5'
18450 5' -55.5 NC_004681.1 + 22282 0.67 0.68783
Target:  5'- cGGCGUgggCGCccuGcCCGuCAUGGCGCa -3'
miRNA:   3'- aCUGCGa--GCGuu-CaGGC-GUAUCGCGa -5'
18450 5' -55.5 NC_004681.1 + 73298 0.67 0.677079
Target:  5'- -uACGaCUCGguAGUCCGUggAGUGCc -3'
miRNA:   3'- acUGC-GAGCguUCAGGCGuaUCGCGa -5'
18450 5' -55.5 NC_004681.1 + 16578 0.68 0.655461
Target:  5'- gGGCGCggCGCcgaguAGUCCGUggGGgGCUg -3'
miRNA:   3'- aCUGCGa-GCGu----UCAGGCGuaUCgCGA- -5'
18450 5' -55.5 NC_004681.1 + 46375 0.68 0.622902
Target:  5'- gGACGUagaCGCAguGGUCCGCGUAGUc-- -3'
miRNA:   3'- aCUGCGa--GCGU--UCAGGCGUAUCGcga -5'
18450 5' -55.5 NC_004681.1 + 58386 0.69 0.612053
Target:  5'- cGACaGCUgGUuuGUCCGCGUGG-GCa -3'
miRNA:   3'- aCUG-CGAgCGuuCAGGCGUAUCgCGa -5'
18450 5' -55.5 NC_004681.1 + 3130 0.69 0.590413
Target:  5'- uUGGCGC-CGCGGGUgcgggcauugCCGC-UGGCGUa -3'
miRNA:   3'- -ACUGCGaGCGUUCA----------GGCGuAUCGCGa -5'
18450 5' -55.5 NC_004681.1 + 31132 0.69 0.57964
Target:  5'- aGAacuucaGCUUGCcgcuGUCCGCGUuGCGCUu -3'
miRNA:   3'- aCUg-----CGAGCGuu--CAGGCGUAuCGCGA- -5'
18450 5' -55.5 NC_004681.1 + 37757 0.69 0.558229
Target:  5'- cGGcCGCUgGCGAGgccCCGCAgaagucggAGCGCg -3'
miRNA:   3'- aCU-GCGAgCGUUCa--GGCGUa-------UCGCGa -5'
18450 5' -55.5 NC_004681.1 + 47496 0.73 0.372665
Target:  5'- uUGACGacgUCGCAGGaCCGCGUcgccguGGCGCg -3'
miRNA:   3'- -ACUGCg--AGCGUUCaGGCGUA------UCGCGa -5'
18450 5' -55.5 NC_004681.1 + 38078 1.07 0.001709
Target:  5'- cUGACGCUCGCAAGUCCGCAUAGCGCUc -3'
miRNA:   3'- -ACUGCGAGCGUUCAGGCGUAUCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.