miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18451 3' -55 NC_004681.1 + 23421 0.66 0.820394
Target:  5'- ---cGCUGUUCACCGucGACCucGGCc-- -3'
miRNA:   3'- agcaCGACAAGUGGCu-CUGG--CCGuag -5'
18451 3' -55 NC_004681.1 + 56081 0.66 0.811243
Target:  5'- gCGUGagggcCUGgcaGCCGAGcACCGGCAc- -3'
miRNA:   3'- aGCAC-----GACaagUGGCUC-UGGCCGUag -5'
18451 3' -55 NC_004681.1 + 60383 0.66 0.811243
Target:  5'- cCGcGCUGcaucagUCGCCGGGGCagugaccaGGCGUUg -3'
miRNA:   3'- aGCaCGACa-----AGUGGCUCUGg-------CCGUAG- -5'
18451 3' -55 NC_004681.1 + 33399 0.66 0.801911
Target:  5'- cCG-GC-GUaCACCGcggcgcGACCGGCGUCg -3'
miRNA:   3'- aGCaCGaCAaGUGGCu-----CUGGCCGUAG- -5'
18451 3' -55 NC_004681.1 + 24843 0.66 0.782744
Target:  5'- gUCGUGgUGaUCucccCCGuuGCCGGUGUCg -3'
miRNA:   3'- -AGCACgACaAGu---GGCucUGGCCGUAG- -5'
18451 3' -55 NC_004681.1 + 11795 0.67 0.772929
Target:  5'- -gGUGCca-UCACCGAGGaCGGCGUg -3'
miRNA:   3'- agCACGacaAGUGGCUCUgGCCGUAg -5'
18451 3' -55 NC_004681.1 + 33360 0.67 0.75289
Target:  5'- ---cGCUG---GCUGAGACCGGCcgCg -3'
miRNA:   3'- agcaCGACaagUGGCUCUGGCCGuaG- -5'
18451 3' -55 NC_004681.1 + 5369 0.67 0.742687
Target:  5'- -aGUGCaUGUUCaccagcggugacACCGAGACCGaggaGCAUg -3'
miRNA:   3'- agCACG-ACAAG------------UGGCUCUGGC----CGUAg -5'
18451 3' -55 NC_004681.1 + 44273 0.68 0.72197
Target:  5'- gCGUGCaugaagaGUUCACCauguGGACUGcGCAUCg -3'
miRNA:   3'- aGCACGa------CAAGUGGc---UCUGGC-CGUAG- -5'
18451 3' -55 NC_004681.1 + 41662 0.68 0.668858
Target:  5'- aCGUGaccaUGUUCAgCGcGGUCGGCAUCg -3'
miRNA:   3'- aGCACg---ACAAGUgGCuCUGGCCGUAG- -5'
18451 3' -55 NC_004681.1 + 40153 0.69 0.658094
Target:  5'- -gGUGCUGgcgucggcCugCGGGAUCGGCuUCg -3'
miRNA:   3'- agCACGACaa------GugGCUCUGGCCGuAG- -5'
18451 3' -55 NC_004681.1 + 12444 0.7 0.571942
Target:  5'- -gGUGUaggugaagggcgUGUUCGgCGAGACCGGC-UCc -3'
miRNA:   3'- agCACG------------ACAAGUgGCUCUGGCCGuAG- -5'
18451 3' -55 NC_004681.1 + 43820 0.8 0.151108
Target:  5'- gCGUGCgaGUUCACCGAGGgCGGCGg- -3'
miRNA:   3'- aGCACGa-CAAGUGGCUCUgGCCGUag -5'
18451 3' -55 NC_004681.1 + 39151 1.09 0.00149
Target:  5'- aUCGUGCUGUUCACCGAGACCGGCAUCc -3'
miRNA:   3'- -AGCACGACAAGUGGCUCUGGCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.