Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18451 | 3' | -55 | NC_004681.1 | + | 39151 | 1.09 | 0.00149 |
Target: 5'- aUCGUGCUGUUCACCGAGACCGGCAUCc -3' miRNA: 3'- -AGCACGACAAGUGGCUCUGGCCGUAG- -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 23421 | 0.66 | 0.820394 |
Target: 5'- ---cGCUGUUCACCGucGACCucGGCc-- -3' miRNA: 3'- agcaCGACAAGUGGCu-CUGG--CCGuag -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 11795 | 0.67 | 0.772929 |
Target: 5'- -gGUGCca-UCACCGAGGaCGGCGUg -3' miRNA: 3'- agCACGacaAGUGGCUCUgGCCGUAg -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 33360 | 0.67 | 0.75289 |
Target: 5'- ---cGCUG---GCUGAGACCGGCcgCg -3' miRNA: 3'- agcaCGACaagUGGCUCUGGCCGuaG- -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 5369 | 0.67 | 0.742687 |
Target: 5'- -aGUGCaUGUUCaccagcggugacACCGAGACCGaggaGCAUg -3' miRNA: 3'- agCACG-ACAAG------------UGGCUCUGGC----CGUAg -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 44273 | 0.68 | 0.72197 |
Target: 5'- gCGUGCaugaagaGUUCACCauguGGACUGcGCAUCg -3' miRNA: 3'- aGCACGa------CAAGUGGc---UCUGGC-CGUAG- -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 41662 | 0.68 | 0.668858 |
Target: 5'- aCGUGaccaUGUUCAgCGcGGUCGGCAUCg -3' miRNA: 3'- aGCACg---ACAAGUgGCuCUGGCCGUAG- -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 56081 | 0.66 | 0.811243 |
Target: 5'- gCGUGagggcCUGgcaGCCGAGcACCGGCAc- -3' miRNA: 3'- aGCAC-----GACaagUGGCUC-UGGCCGUag -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 33399 | 0.66 | 0.801911 |
Target: 5'- cCG-GC-GUaCACCGcggcgcGACCGGCGUCg -3' miRNA: 3'- aGCaCGaCAaGUGGCu-----CUGGCCGUAG- -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 24843 | 0.66 | 0.782744 |
Target: 5'- gUCGUGgUGaUCucccCCGuuGCCGGUGUCg -3' miRNA: 3'- -AGCACgACaAGu---GGCucUGGCCGUAG- -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 40153 | 0.69 | 0.658094 |
Target: 5'- -gGUGCUGgcgucggcCugCGGGAUCGGCuUCg -3' miRNA: 3'- agCACGACaa------GugGCUCUGGCCGuAG- -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 12444 | 0.7 | 0.571942 |
Target: 5'- -gGUGUaggugaagggcgUGUUCGgCGAGACCGGC-UCc -3' miRNA: 3'- agCACG------------ACAAGUgGCUCUGGCCGuAG- -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 43820 | 0.8 | 0.151108 |
Target: 5'- gCGUGCgaGUUCACCGAGGgCGGCGg- -3' miRNA: 3'- aGCACGa-CAAGUGGCUCUgGCCGUag -5' |
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18451 | 3' | -55 | NC_004681.1 | + | 60383 | 0.66 | 0.811243 |
Target: 5'- cCGcGCUGcaucagUCGCCGGGGCagugaccaGGCGUUg -3' miRNA: 3'- aGCaCGACa-----AGUGGCUCUGg-------CCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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