miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18451 5' -57.2 NC_004681.1 + 51030 0.66 0.730672
Target:  5'- aGGgcGUcaUCGCCCUCGGCGacggCGAGa- -3'
miRNA:   3'- cUCuaCG--AGCGGGAGCUGCa---GCUCcu -5'
18451 5' -57.2 NC_004681.1 + 68291 0.66 0.720455
Target:  5'- aGAGA-GUcgUUGgCCUUGACGUCGAuGGGg -3'
miRNA:   3'- -CUCUaCG--AGCgGGAGCUGCAGCU-CCU- -5'
18451 5' -57.2 NC_004681.1 + 54395 0.66 0.720455
Target:  5'- cGGAUGUgcCGCUCUUGAgGUgggCGAGGAc -3'
miRNA:   3'- cUCUACGa-GCGGGAGCUgCA---GCUCCU- -5'
18451 5' -57.2 NC_004681.1 + 59955 0.66 0.720455
Target:  5'- uGGGAcggcucagGCaUCGCUUUCGAUGUCGAGa- -3'
miRNA:   3'- -CUCUa-------CG-AGCGGGAGCUGCAGCUCcu -5'
18451 5' -57.2 NC_004681.1 + 58038 0.66 0.710157
Target:  5'- -uGAUGC-CGagguuuUCCUUGAUGUCGAGGu -3'
miRNA:   3'- cuCUACGaGC------GGGAGCUGCAGCUCCu -5'
18451 5' -57.2 NC_004681.1 + 10847 0.66 0.710157
Target:  5'- uGGA-GCUUGCCCUUgucccaGugGUCGcGGAc -3'
miRNA:   3'- cUCUaCGAGCGGGAG------CugCAGCuCCU- -5'
18451 5' -57.2 NC_004681.1 + 18040 0.66 0.710157
Target:  5'- cGGA-GC-CGCCCUCGGCacucaccugCGGGGAc -3'
miRNA:   3'- cUCUaCGaGCGGGAGCUGca-------GCUCCU- -5'
18451 5' -57.2 NC_004681.1 + 44920 0.66 0.689358
Target:  5'- cGGggGC-CGCCCgucUCGAUGUCGuAGGu -3'
miRNA:   3'- cUCuaCGaGCGGG---AGCUGCAGC-UCCu -5'
18451 5' -57.2 NC_004681.1 + 64364 0.66 0.678877
Target:  5'- uGGA-GCUCGaauuCCUCGGCGgugugcgguUCGGGGAu -3'
miRNA:   3'- cUCUaCGAGCg---GGAGCUGC---------AGCUCCU- -5'
18451 5' -57.2 NC_004681.1 + 19010 0.67 0.657801
Target:  5'- aGGGUGCUCGCCaa-GACGgCGAcaccuGGAa -3'
miRNA:   3'- cUCUACGAGCGGgagCUGCaGCU-----CCU- -5'
18451 5' -57.2 NC_004681.1 + 1900 0.67 0.647226
Target:  5'- uGGGAUGUacUCGCUCUgccuggccuaCGACGgUGAGGAg -3'
miRNA:   3'- -CUCUACG--AGCGGGA----------GCUGCaGCUCCU- -5'
18451 5' -57.2 NC_004681.1 + 56114 0.67 0.647226
Target:  5'- -cGAUGCggaggUCGCCCUCcuuGGCGUCgcgcugcguGAGGGc -3'
miRNA:   3'- cuCUACG-----AGCGGGAG---CUGCAG---------CUCCU- -5'
18451 5' -57.2 NC_004681.1 + 45338 0.67 0.636638
Target:  5'- cGAGAaggGC-CGCUC-CGACGUCGAGc- -3'
miRNA:   3'- -CUCUa--CGaGCGGGaGCUGCAGCUCcu -5'
18451 5' -57.2 NC_004681.1 + 50233 0.69 0.542166
Target:  5'- gGAGAUGC-CGCCgUCGucagCGAGGGc -3'
miRNA:   3'- -CUCUACGaGCGGgAGCugcaGCUCCU- -5'
18451 5' -57.2 NC_004681.1 + 27037 0.69 0.521707
Target:  5'- ----cGgUCGCCUucgaguccguggUCGGCGUCGAGGGa -3'
miRNA:   3'- cucuaCgAGCGGG------------AGCUGCAGCUCCU- -5'
18451 5' -57.2 NC_004681.1 + 44793 0.69 0.508569
Target:  5'- -uGGUGCgcgugacgccgccgUCGCCgUUGcCGUCGAGGAg -3'
miRNA:   3'- cuCUACG--------------AGCGGgAGCuGCAGCUCCU- -5'
18451 5' -57.2 NC_004681.1 + 59337 0.7 0.443334
Target:  5'- uGAGGUGCa---CCUCGAcCGUUGAGGAg -3'
miRNA:   3'- -CUCUACGagcgGGAGCU-GCAGCUCCU- -5'
18451 5' -57.2 NC_004681.1 + 58992 0.74 0.294511
Target:  5'- cAGGUGCUCGaagaCCUCGugGggGAGGGc -3'
miRNA:   3'- cUCUACGAGCg---GGAGCugCagCUCCU- -5'
18451 5' -57.2 NC_004681.1 + 6998 0.76 0.213321
Target:  5'- aGGAUGUUCGgaCCCUCGugGaCGAGGGg -3'
miRNA:   3'- cUCUACGAGC--GGGAGCugCaGCUCCU- -5'
18451 5' -57.2 NC_004681.1 + 22486 0.76 0.207945
Target:  5'- cGGGGUGaccagCGuCCaCUCGACGUCGGGGAg -3'
miRNA:   3'- -CUCUACga---GC-GG-GAGCUGCAGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.