miRNA: 3'- cucuaCGA--GCGGGAGCUGCAGCUCCU- -5'
miRNA: 3'- cucuACGa-GCGGGAGCUGCAGCUCCU- -5'
miRNA: 3'- -CUCUACGAGCGGGAGCUGCAGCUCCU- -5'
Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18451 | 5' | -57.2 | NC_004681.1 | + | 39295 | 0.78 | 0.160375 |
|
Target: 5'- ----gGCUgaCGUCCUCGACGUCGAGGGc -3' miRNA: 3'- cucuaCGA--GCGGGAGCUGCAGCUCCU- -5' |
|||||||
| 18451 | 5' | -57.2 | NC_004681.1 | + | 44735 | 0.82 | 0.086199 |
|
Target: 5'- ---cUGCggCGCCUUCGACGUCGAGGAc -3' miRNA: 3'- cucuACGa-GCGGGAGCUGCAGCUCCU- -5' |
|||||||
| 18451 | 5' | -57.2 | NC_004681.1 | + | 39186 | 1.08 | 0.001234 |
|
Target: 5'- gGAGAUGCUCGCCCUCGACGUCGAGGAc -3' miRNA: 3'- -CUCUACGAGCGGGAGCUGCAGCUCCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home