Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18451 | 5' | -57.2 | NC_004681.1 | + | 1900 | 0.67 | 0.647226 |
Target: 5'- uGGGAUGUacUCGCUCUgccuggccuaCGACGgUGAGGAg -3' miRNA: 3'- -CUCUACG--AGCGGGA----------GCUGCaGCUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 6998 | 0.76 | 0.213321 |
Target: 5'- aGGAUGUUCGgaCCCUCGugGaCGAGGGg -3' miRNA: 3'- cUCUACGAGC--GGGAGCugCaGCUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 10847 | 0.66 | 0.710157 |
Target: 5'- uGGA-GCUUGCCCUUgucccaGugGUCGcGGAc -3' miRNA: 3'- cUCUaCGAGCGGGAG------CugCAGCuCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 18040 | 0.66 | 0.710157 |
Target: 5'- cGGA-GC-CGCCCUCGGCacucaccugCGGGGAc -3' miRNA: 3'- cUCUaCGaGCGGGAGCUGca-------GCUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 19010 | 0.67 | 0.657801 |
Target: 5'- aGGGUGCUCGCCaa-GACGgCGAcaccuGGAa -3' miRNA: 3'- cUCUACGAGCGGgagCUGCaGCU-----CCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 22486 | 0.76 | 0.207945 |
Target: 5'- cGGGGUGaccagCGuCCaCUCGACGUCGGGGAg -3' miRNA: 3'- -CUCUACga---GC-GG-GAGCUGCAGCUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 27037 | 0.69 | 0.521707 |
Target: 5'- ----cGgUCGCCUucgaguccguggUCGGCGUCGAGGGa -3' miRNA: 3'- cucuaCgAGCGGG------------AGCUGCAGCUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 39186 | 1.08 | 0.001234 |
Target: 5'- gGAGAUGCUCGCCCUCGACGUCGAGGAc -3' miRNA: 3'- -CUCUACGAGCGGGAGCUGCAGCUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 39295 | 0.78 | 0.160375 |
Target: 5'- ----gGCUgaCGUCCUCGACGUCGAGGGc -3' miRNA: 3'- cucuaCGA--GCGGGAGCUGCAGCUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 44735 | 0.82 | 0.086199 |
Target: 5'- ---cUGCggCGCCUUCGACGUCGAGGAc -3' miRNA: 3'- cucuACGa-GCGGGAGCUGCAGCUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 44793 | 0.69 | 0.508569 |
Target: 5'- -uGGUGCgcgugacgccgccgUCGCCgUUGcCGUCGAGGAg -3' miRNA: 3'- cuCUACG--------------AGCGGgAGCuGCAGCUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 44920 | 0.66 | 0.689358 |
Target: 5'- cGGggGC-CGCCCgucUCGAUGUCGuAGGu -3' miRNA: 3'- cUCuaCGaGCGGG---AGCUGCAGC-UCCu -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 45338 | 0.67 | 0.636638 |
Target: 5'- cGAGAaggGC-CGCUC-CGACGUCGAGc- -3' miRNA: 3'- -CUCUa--CGaGCGGGaGCUGCAGCUCcu -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 50233 | 0.69 | 0.542166 |
Target: 5'- gGAGAUGC-CGCCgUCGucagCGAGGGc -3' miRNA: 3'- -CUCUACGaGCGGgAGCugcaGCUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 51030 | 0.66 | 0.730672 |
Target: 5'- aGGgcGUcaUCGCCCUCGGCGacggCGAGa- -3' miRNA: 3'- cUCuaCG--AGCGGGAGCUGCa---GCUCcu -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 54395 | 0.66 | 0.720455 |
Target: 5'- cGGAUGUgcCGCUCUUGAgGUgggCGAGGAc -3' miRNA: 3'- cUCUACGa-GCGGGAGCUgCA---GCUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 56114 | 0.67 | 0.647226 |
Target: 5'- -cGAUGCggaggUCGCCCUCcuuGGCGUCgcgcugcguGAGGGc -3' miRNA: 3'- cuCUACG-----AGCGGGAG---CUGCAG---------CUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 58038 | 0.66 | 0.710157 |
Target: 5'- -uGAUGC-CGagguuuUCCUUGAUGUCGAGGu -3' miRNA: 3'- cuCUACGaGC------GGGAGCUGCAGCUCCu -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 58992 | 0.74 | 0.294511 |
Target: 5'- cAGGUGCUCGaagaCCUCGugGggGAGGGc -3' miRNA: 3'- cUCUACGAGCg---GGAGCugCagCUCCU- -5' |
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18451 | 5' | -57.2 | NC_004681.1 | + | 59337 | 0.7 | 0.443334 |
Target: 5'- uGAGGUGCa---CCUCGAcCGUUGAGGAg -3' miRNA: 3'- -CUCUACGagcgGGAGCU-GCAGCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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