miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18452 3' -56.8 NC_004681.1 + 41070 0.68 0.594333
Target:  5'- cGCCGCCGC--CGAuGUGCUCaCCGAa- -3'
miRNA:   3'- -CGGCGGCGcaGUU-CAUGAGgGGCUac -5'
18452 3' -56.8 NC_004681.1 + 43705 0.66 0.740797
Target:  5'- cGCCGCCGC----AGUACaccgccgCCCuCGGUGa -3'
miRNA:   3'- -CGGCGGCGcaguUCAUGa------GGG-GCUAC- -5'
18452 3' -56.8 NC_004681.1 + 44597 0.66 0.740797
Target:  5'- gGCCGCCGCacuacucaccccGUCc--UGCUCgCUGAUGa -3'
miRNA:   3'- -CGGCGGCG------------CAGuucAUGAGgGGCUAC- -5'
18452 3' -56.8 NC_004681.1 + 44741 0.67 0.657801
Target:  5'- cGCCuUCGaCGUCGAGgACUCCCuCGcgGg -3'
miRNA:   3'- -CGGcGGC-GCAGUUCaUGAGGG-GCuaC- -5'
18452 3' -56.8 NC_004681.1 + 45073 0.7 0.521707
Target:  5'- uCCGCCGCgGUCGAGgccCUCgCCGcgGu -3'
miRNA:   3'- cGGCGGCG-CAGUUCau-GAGgGGCuaC- -5'
18452 3' -56.8 NC_004681.1 + 45485 0.67 0.689358
Target:  5'- aCCGCUGCccuUgAGGUGCUCCCCc--- -3'
miRNA:   3'- cGGCGGCGc--AgUUCAUGAGGGGcuac -5'
18452 3' -56.8 NC_004681.1 + 46922 0.68 0.604885
Target:  5'- uGCCGCggggcUGCGUCucguagcgcuccGAGUAUUCCUCGAc- -3'
miRNA:   3'- -CGGCG-----GCGCAG------------UUCAUGAGGGGCUac -5'
18452 3' -56.8 NC_004681.1 + 50228 0.73 0.363686
Target:  5'- uGCCGCCGuCGUCAgcgAGggcgaugaGCUCCUCGAg- -3'
miRNA:   3'- -CGGCGGC-GCAGU---UCa-------UGAGGGGCUac -5'
18452 3' -56.8 NC_004681.1 + 51822 0.68 0.615458
Target:  5'- gGCCGCCGaCGaccacCAGGU--UCCCCGggGa -3'
miRNA:   3'- -CGGCGGC-GCa----GUUCAugAGGGGCuaC- -5'
18452 3' -56.8 NC_004681.1 + 56148 0.66 0.730672
Target:  5'- aCCGCCGCaUCAAGgcgaugaaGCUCCgCGGc- -3'
miRNA:   3'- cGGCGGCGcAGUUCa-------UGAGGgGCUac -5'
18452 3' -56.8 NC_004681.1 + 60123 0.67 0.699787
Target:  5'- aGCCGCCgaagGCGagCAGGUGC-CCaCCGGg- -3'
miRNA:   3'- -CGGCGG----CGCa-GUUCAUGaGG-GGCUac -5'
18452 3' -56.8 NC_004681.1 + 61670 0.68 0.615458
Target:  5'- cGCCGCCGCGgaggCcgccgccgAGGU-CUCCaaGAUGg -3'
miRNA:   3'- -CGGCGGCGCa---G--------UUCAuGAGGggCUAC- -5'
18452 3' -56.8 NC_004681.1 + 62105 0.72 0.415684
Target:  5'- aCgGCCGCGUCGAGUAggCCgCGAUc -3'
miRNA:   3'- cGgCGGCGCAGUUCAUgaGGgGCUAc -5'
18452 3' -56.8 NC_004681.1 + 64936 0.66 0.740797
Target:  5'- gGUCGCgGCG-CAGGUACcagUCCCaCGGg- -3'
miRNA:   3'- -CGGCGgCGCaGUUCAUG---AGGG-GCUac -5'
18452 3' -56.8 NC_004681.1 + 66758 0.66 0.740797
Target:  5'- cCCgGCC-CcUCGGGUACcCCCCGAUGc -3'
miRNA:   3'- cGG-CGGcGcAGUUCAUGaGGGGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.