miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18452 3' -56.8 NC_004681.1 + 26545 0.66 0.710157
Target:  5'- aGCCGUacucuggcggCGCGaaGGG-GCUUCCCGAUGg -3'
miRNA:   3'- -CGGCG----------GCGCagUUCaUGAGGGGCUAC- -5'
18452 3' -56.8 NC_004681.1 + 22039 0.75 0.273847
Target:  5'- gGCCGCCGaCGaaGAGgucCUUCCCGAUGg -3'
miRNA:   3'- -CGGCGGC-GCagUUCau-GAGGGGCUAC- -5'
18452 3' -56.8 NC_004681.1 + 21430 0.67 0.668355
Target:  5'- cGCCGCUGCgGUCGAccACgUCCacgaCGAUGg -3'
miRNA:   3'- -CGGCGGCG-CAGUUcaUG-AGGg---GCUAC- -5'
18452 3' -56.8 NC_004681.1 + 19923 0.77 0.203208
Target:  5'- gGCCaCCGCGggccugcucaacacgCAGGUGCUCCCCGGg- -3'
miRNA:   3'- -CGGcGGCGCa--------------GUUCAUGAGGGGCUac -5'
18452 3' -56.8 NC_004681.1 + 13490 0.76 0.224431
Target:  5'- cGUCGCCGCGguu-GUGCUUCUCGAUGc -3'
miRNA:   3'- -CGGCGGCGCaguuCAUGAGGGGCUAC- -5'
18452 3' -56.8 NC_004681.1 + 13248 0.77 0.202687
Target:  5'- aCCGCCGCGUCAA--GCUCgCCGAa- -3'
miRNA:   3'- cGGCGGCGCAGUUcaUGAGgGGCUac -5'
18452 3' -56.8 NC_004681.1 + 12483 0.68 0.594333
Target:  5'- cGUCGCCGCGgugguGGUGC-CaCCCGAg- -3'
miRNA:   3'- -CGGCGGCGCagu--UCAUGaG-GGGCUac -5'
18452 3' -56.8 NC_004681.1 + 10844 0.69 0.531901
Target:  5'- cGCCGCCGCGauugCGAccuCUCCCgCGGUu -3'
miRNA:   3'- -CGGCGGCGCa---GUUcauGAGGG-GCUAc -5'
18452 3' -56.8 NC_004681.1 + 7437 0.67 0.678877
Target:  5'- cGCCGCgGCGgCGGGgucagCCCCGGg- -3'
miRNA:   3'- -CGGCGgCGCaGUUCauga-GGGGCUac -5'
18452 3' -56.8 NC_004681.1 + 7190 0.66 0.750821
Target:  5'- -aUGCCaGCGUUGAGgAgUUCCCGGUGg -3'
miRNA:   3'- cgGCGG-CGCAGUUCaUgAGGGGCUAC- -5'
18452 3' -56.8 NC_004681.1 + 6613 0.67 0.657801
Target:  5'- aGgCGCCGCGgcucGGUcUUCCCCGAg- -3'
miRNA:   3'- -CgGCGGCGCagu-UCAuGAGGGGCUac -5'
18452 3' -56.8 NC_004681.1 + 3662 0.72 0.41478
Target:  5'- cGUCGCCGCccagaugGUCAAGUuCUCgCCGAUc -3'
miRNA:   3'- -CGGCGGCG-------CAGUUCAuGAGgGGCUAc -5'
18452 3' -56.8 NC_004681.1 + 3108 0.67 0.677826
Target:  5'- uGCCGCUgGCGUagucguaggagagCGGGUACcggcugCCUCGAUGg -3'
miRNA:   3'- -CGGCGG-CGCA-------------GUUCAUGa-----GGGGCUAC- -5'
18452 3' -56.8 NC_004681.1 + 2723 0.67 0.647226
Target:  5'- uCCGCgGCGUgAAcGUAaUCCCCGAc- -3'
miRNA:   3'- cGGCGgCGCAgUU-CAUgAGGGGCUac -5'
18452 3' -56.8 NC_004681.1 + 2471 0.68 0.594333
Target:  5'- uCgGCCGCGUCGAaUACUCCgaCGAg- -3'
miRNA:   3'- cGgCGGCGCAGUUcAUGAGGg-GCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.