Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18452 | 3' | -56.8 | NC_004681.1 | + | 39265 | 1.09 | 0.0011 |
Target: 5'- gGCCGCCGCGUCAAGUACUCCCCGAUGu -3' miRNA: 3'- -CGGCGGCGCAGUUCAUGAGGGGCUAC- -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 13248 | 0.77 | 0.202687 |
Target: 5'- aCCGCCGCGUCAA--GCUCgCCGAa- -3' miRNA: 3'- cGGCGGCGCAGUUcaUGAGgGGCUac -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 19923 | 0.77 | 0.203208 |
Target: 5'- gGCCaCCGCGggccugcucaacacgCAGGUGCUCCCCGGg- -3' miRNA: 3'- -CGGcGGCGCa--------------GUUCAUGAGGGGCUac -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 13490 | 0.76 | 0.224431 |
Target: 5'- cGUCGCCGCGguu-GUGCUUCUCGAUGc -3' miRNA: 3'- -CGGCGGCGCaguuCAUGAGGGGCUAC- -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 39404 | 0.75 | 0.260726 |
Target: 5'- cGCCGCgCGCG-CAGGUAUUUgUCGAUGg -3' miRNA: 3'- -CGGCG-GCGCaGUUCAUGAGgGGCUAC- -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 22039 | 0.75 | 0.273847 |
Target: 5'- gGCCGCCGaCGaaGAGgucCUUCCCGAUGg -3' miRNA: 3'- -CGGCGGC-GCagUUCau-GAGGGGCUAC- -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 50228 | 0.73 | 0.363686 |
Target: 5'- uGCCGCCGuCGUCAgcgAGggcgaugaGCUCCUCGAg- -3' miRNA: 3'- -CGGCGGC-GCAGU---UCa-------UGAGGGGCUac -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 3662 | 0.72 | 0.41478 |
Target: 5'- cGUCGCCGCccagaugGUCAAGUuCUCgCCGAUc -3' miRNA: 3'- -CGGCGGCG-------CAGUUCAuGAGgGGCUAc -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 62105 | 0.72 | 0.415684 |
Target: 5'- aCgGCCGCGUCGAGUAggCCgCGAUc -3' miRNA: 3'- cGgCGGCGCAGUUCAUgaGGgGCUAc -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 37045 | 0.71 | 0.434001 |
Target: 5'- gGCCGCCGCGUgGAGUcGCcuaCUgGAUGa -3' miRNA: 3'- -CGGCGGCGCAgUUCA-UGag-GGgCUAC- -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 45073 | 0.7 | 0.521707 |
Target: 5'- uCCGCCGCgGUCGAGgccCUCgCCGcgGu -3' miRNA: 3'- cGGCGGCG-CAGUUCau-GAGgGGCuaC- -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 10844 | 0.69 | 0.531901 |
Target: 5'- cGCCGCCGCGauugCGAccuCUCCCgCGGUu -3' miRNA: 3'- -CGGCGGCGCa---GUUcauGAGGG-GCUAc -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 12483 | 0.68 | 0.594333 |
Target: 5'- cGUCGCCGCGgugguGGUGC-CaCCCGAg- -3' miRNA: 3'- -CGGCGGCGCagu--UCAUGaG-GGGCUac -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 2471 | 0.68 | 0.594333 |
Target: 5'- uCgGCCGCGUCGAaUACUCCgaCGAg- -3' miRNA: 3'- cGgCGGCGCAGUUcAUGAGGg-GCUac -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 41070 | 0.68 | 0.594333 |
Target: 5'- cGCCGCCGC--CGAuGUGCUCaCCGAa- -3' miRNA: 3'- -CGGCGGCGcaGUU-CAUGAGgGGCUac -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 46922 | 0.68 | 0.604885 |
Target: 5'- uGCCGCggggcUGCGUCucguagcgcuccGAGUAUUCCUCGAc- -3' miRNA: 3'- -CGGCG-----GCGCAG------------UUCAUGAGGGGCUac -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 51822 | 0.68 | 0.615458 |
Target: 5'- gGCCGCCGaCGaccacCAGGU--UCCCCGggGa -3' miRNA: 3'- -CGGCGGC-GCa----GUUCAugAGGGGCuaC- -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 61670 | 0.68 | 0.615458 |
Target: 5'- cGCCGCCGCGgaggCcgccgccgAGGU-CUCCaaGAUGg -3' miRNA: 3'- -CGGCGGCGCa---G--------UUCAuGAGGggCUAC- -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 2723 | 0.67 | 0.647226 |
Target: 5'- uCCGCgGCGUgAAcGUAaUCCCCGAc- -3' miRNA: 3'- cGGCGgCGCAgUU-CAUgAGGGGCUac -5' |
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18452 | 3' | -56.8 | NC_004681.1 | + | 44741 | 0.67 | 0.657801 |
Target: 5'- cGCCuUCGaCGUCGAGgACUCCCuCGcgGg -3' miRNA: 3'- -CGGcGGC-GCAGUUCaUGAGGG-GCuaC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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