miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18452 3' -56.8 NC_004681.1 + 12483 0.68 0.594333
Target:  5'- cGUCGCCGCGgugguGGUGC-CaCCCGAg- -3'
miRNA:   3'- -CGGCGGCGCagu--UCAUGaG-GGGCUac -5'
18452 3' -56.8 NC_004681.1 + 41070 0.68 0.594333
Target:  5'- cGCCGCCGC--CGAuGUGCUCaCCGAa- -3'
miRNA:   3'- -CGGCGGCGcaGUU-CAUGAGgGGCUac -5'
18452 3' -56.8 NC_004681.1 + 2471 0.68 0.594333
Target:  5'- uCgGCCGCGUCGAaUACUCCgaCGAg- -3'
miRNA:   3'- cGgCGGCGCAGUUcAUGAGGg-GCUac -5'
18452 3' -56.8 NC_004681.1 + 10844 0.69 0.531901
Target:  5'- cGCCGCCGCGauugCGAccuCUCCCgCGGUu -3'
miRNA:   3'- -CGGCGGCGCa---GUUcauGAGGG-GCUAc -5'
18452 3' -56.8 NC_004681.1 + 45073 0.7 0.521707
Target:  5'- uCCGCCGCgGUCGAGgccCUCgCCGcgGu -3'
miRNA:   3'- cGGCGGCG-CAGUUCau-GAGgGGCuaC- -5'
18452 3' -56.8 NC_004681.1 + 37045 0.71 0.434001
Target:  5'- gGCCGCCGCGUgGAGUcGCcuaCUgGAUGa -3'
miRNA:   3'- -CGGCGGCGCAgUUCA-UGag-GGgCUAC- -5'
18452 3' -56.8 NC_004681.1 + 62105 0.72 0.415684
Target:  5'- aCgGCCGCGUCGAGUAggCCgCGAUc -3'
miRNA:   3'- cGgCGGCGCAGUUCAUgaGGgGCUAc -5'
18452 3' -56.8 NC_004681.1 + 3662 0.72 0.41478
Target:  5'- cGUCGCCGCccagaugGUCAAGUuCUCgCCGAUc -3'
miRNA:   3'- -CGGCGGCG-------CAGUUCAuGAGgGGCUAc -5'
18452 3' -56.8 NC_004681.1 + 50228 0.73 0.363686
Target:  5'- uGCCGCCGuCGUCAgcgAGggcgaugaGCUCCUCGAg- -3'
miRNA:   3'- -CGGCGGC-GCAGU---UCa-------UGAGGGGCUac -5'
18452 3' -56.8 NC_004681.1 + 22039 0.75 0.273847
Target:  5'- gGCCGCCGaCGaaGAGgucCUUCCCGAUGg -3'
miRNA:   3'- -CGGCGGC-GCagUUCau-GAGGGGCUAC- -5'
18452 3' -56.8 NC_004681.1 + 39404 0.75 0.260726
Target:  5'- cGCCGCgCGCG-CAGGUAUUUgUCGAUGg -3'
miRNA:   3'- -CGGCG-GCGCaGUUCAUGAGgGGCUAC- -5'
18452 3' -56.8 NC_004681.1 + 13490 0.76 0.224431
Target:  5'- cGUCGCCGCGguu-GUGCUUCUCGAUGc -3'
miRNA:   3'- -CGGCGGCGCaguuCAUGAGGGGCUAC- -5'
18452 3' -56.8 NC_004681.1 + 19923 0.77 0.203208
Target:  5'- gGCCaCCGCGggccugcucaacacgCAGGUGCUCCCCGGg- -3'
miRNA:   3'- -CGGcGGCGCa--------------GUUCAUGAGGGGCUac -5'
18452 3' -56.8 NC_004681.1 + 13248 0.77 0.202687
Target:  5'- aCCGCCGCGUCAA--GCUCgCCGAa- -3'
miRNA:   3'- cGGCGGCGCAGUUcaUGAGgGGCUac -5'
18452 3' -56.8 NC_004681.1 + 39265 1.09 0.0011
Target:  5'- gGCCGCCGCGUCAAGUACUCCCCGAUGu -3'
miRNA:   3'- -CGGCGGCGCAGUUCAUGAGGGGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.