miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18452 5' -53.5 NC_004681.1 + 50523 0.67 0.835427
Target:  5'- gACCGagGGCAcggagaucgcGGUugCUGaGCGCGCGc -3'
miRNA:   3'- -UGGUagCUGU----------UUAugGACgCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 11848 0.67 0.8174
Target:  5'- cACCAagauUUGGCAGucGCg-GCGCGCGCa -3'
miRNA:   3'- -UGGU----AGCUGUUuaUGgaCGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 10296 0.67 0.8174
Target:  5'- -aCGUCGcCAuucGCCU-CGCGCGCGa -3'
miRNA:   3'- ugGUAGCuGUuuaUGGAcGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 62212 0.67 0.808095
Target:  5'- cAUgGUgGGCuGGUaccgccACCUGUGCGCGCGc -3'
miRNA:   3'- -UGgUAgCUGuUUA------UGGACGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 61772 0.68 0.798608
Target:  5'- gACC-UCGGCGGcgGCCUcCGCG-GCGg -3'
miRNA:   3'- -UGGuAGCUGUUuaUGGAcGCGCgCGC- -5'
18452 5' -53.5 NC_004681.1 + 7498 0.68 0.78895
Target:  5'- cCgGUCGAUgccuggGCCUGgGUGCGCGc -3'
miRNA:   3'- uGgUAGCUGuuua--UGGACgCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 24835 0.68 0.78895
Target:  5'- cUCAUCGGCGucgGCg-GCGCGgGCGg -3'
miRNA:   3'- uGGUAGCUGUuuaUGgaCGCGCgCGC- -5'
18452 5' -53.5 NC_004681.1 + 48319 0.68 0.78895
Target:  5'- aGCC-UCGGCGAGggccaGCUUGUagGCGCGCu -3'
miRNA:   3'- -UGGuAGCUGUUUa----UGGACG--CGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 42396 0.68 0.787975
Target:  5'- aGCCAUcuaCGACGAAUACg-GCGCccccgucucgucgGCGCGc -3'
miRNA:   3'- -UGGUA---GCUGUUUAUGgaCGCG-------------CGCGC- -5'
18452 5' -53.5 NC_004681.1 + 70211 0.68 0.779131
Target:  5'- aGCCAaUGAgGAAcgcaugGCCcgUGUGCGCGCGg -3'
miRNA:   3'- -UGGUaGCUgUUUa-----UGG--ACGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 8810 0.68 0.779131
Target:  5'- gACCAUcacCGAUGAAggUCUGCGCGaCGCa -3'
miRNA:   3'- -UGGUA---GCUGUUUauGGACGCGC-GCGc -5'
18452 5' -53.5 NC_004681.1 + 39942 0.68 0.769163
Target:  5'- cGCCucaaCGACAAGUcgAUCcGCGCGCGuCGg -3'
miRNA:   3'- -UGGua--GCUGUUUA--UGGaCGCGCGC-GC- -5'
18452 5' -53.5 NC_004681.1 + 34842 0.68 0.769163
Target:  5'- cCCuacuUCGACAAGgggcggcgGCCgaaGCGCGCGgGa -3'
miRNA:   3'- uGGu---AGCUGUUUa-------UGGa--CGCGCGCgC- -5'
18452 5' -53.5 NC_004681.1 + 2469 0.68 0.769163
Target:  5'- gACCAgaaucuccUCGAaGAAUGCCUGgGCcuuguuggcGCGCGg -3'
miRNA:   3'- -UGGU--------AGCUgUUUAUGGACgCG---------CGCGC- -5'
18452 5' -53.5 NC_004681.1 + 37202 0.68 0.748822
Target:  5'- uACgCAuUCGACAGGg--CUGCGCGUGUGg -3'
miRNA:   3'- -UG-GU-AGCUGUUUaugGACGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 39969 0.68 0.748822
Target:  5'- cGCCugGUCGAgGAAgcgcUGCUcgaacuugGCGCGCGCGg -3'
miRNA:   3'- -UGG--UAGCUgUUU----AUGGa-------CGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 70458 0.68 0.748822
Target:  5'- cGCCAUgGugGu---CCUGCGgcCGCGCGu -3'
miRNA:   3'- -UGGUAgCugUuuauGGACGC--GCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 46867 0.69 0.73847
Target:  5'- gACCGU-GAC----GCCgUGCGCGCGCa -3'
miRNA:   3'- -UGGUAgCUGuuuaUGG-ACGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 5989 0.69 0.73847
Target:  5'- uGCCGguauUCGAgGA--GCCaGCGUGCGCGc -3'
miRNA:   3'- -UGGU----AGCUgUUuaUGGaCGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 22149 0.69 0.721694
Target:  5'- uGCCAUCGcCGAugaacacuuggacuUGgUUGCGCGCGCu -3'
miRNA:   3'- -UGGUAGCuGUUu-------------AUgGACGCGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.