miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18453 3' -50.9 NC_004681.1 + 28186 0.66 0.968462
Target:  5'- aGGUGaCGGuggCGAUgGCUACAcCAAGa -3'
miRNA:   3'- -CCGCaGUCua-GCUGgCGAUGUaGUUC- -5'
18453 3' -50.9 NC_004681.1 + 19372 0.66 0.968462
Target:  5'- aGGCGUCGuuGUUGACCGCg--GUCcAGg -3'
miRNA:   3'- -CCGCAGUc-UAGCUGGCGaugUAGuUC- -5'
18453 3' -50.9 NC_004681.1 + 29136 0.66 0.968462
Target:  5'- cGCGUCAGGcguggCGACCucaacgGCcACGUCAAc -3'
miRNA:   3'- cCGCAGUCUa----GCUGG------CGaUGUAGUUc -5'
18453 3' -50.9 NC_004681.1 + 16593 0.66 0.968462
Target:  5'- cGGCGUCcccGGUCGACCuGCaACugCAGGc -3'
miRNA:   3'- -CCGCAGu--CUAGCUGG-CGaUGuaGUUC- -5'
18453 3' -50.9 NC_004681.1 + 39397 0.66 0.965073
Target:  5'- cGCG-CAGGUauuugucgauggUGGCCGCgcACAUCGGGg -3'
miRNA:   3'- cCGCaGUCUA------------GCUGGCGa-UGUAGUUC- -5'
18453 3' -50.9 NC_004681.1 + 53065 0.66 0.965073
Target:  5'- cGGCucuucuauUCGGAUCGGgaccCgCGCUACAUCGAc -3'
miRNA:   3'- -CCGc-------AGUCUAGCU----G-GCGAUGUAGUUc -5'
18453 3' -50.9 NC_004681.1 + 39255 0.66 0.965073
Target:  5'- gGGCGcCAag--GGCCGCcGCGUCAAGu -3'
miRNA:   3'- -CCGCaGUcuagCUGGCGaUGUAGUUC- -5'
18453 3' -50.9 NC_004681.1 + 23941 0.66 0.961437
Target:  5'- cGGCGcCGGAUCGGCgUGCUcaacACGUUc-- -3'
miRNA:   3'- -CCGCaGUCUAGCUG-GCGA----UGUAGuuc -5'
18453 3' -50.9 NC_004681.1 + 9048 0.66 0.957547
Target:  5'- aGGCGgugaagCcGGUCGAaCGCUGCAgCAGGc -3'
miRNA:   3'- -CCGCa-----GuCUAGCUgGCGAUGUaGUUC- -5'
18453 3' -50.9 NC_004681.1 + 51469 0.66 0.957547
Target:  5'- aGCGUCGccucaucgaacuGggCGACCGCUGCcgCcAGc -3'
miRNA:   3'- cCGCAGU------------CuaGCUGGCGAUGuaGuUC- -5'
18453 3' -50.9 NC_004681.1 + 35703 0.66 0.955088
Target:  5'- cGCGUCAGcaAUUGACgcaaGCUGCAgaagguccucucgugUCAGGg -3'
miRNA:   3'- cCGCAGUC--UAGCUGg---CGAUGU---------------AGUUC- -5'
18453 3' -50.9 NC_004681.1 + 10410 0.66 0.953396
Target:  5'- aGGCugacCAGGccauucUgGACCGCUACGUCAu- -3'
miRNA:   3'- -CCGca--GUCU------AgCUGGCGAUGUAGUuc -5'
18453 3' -50.9 NC_004681.1 + 41933 0.66 0.948981
Target:  5'- cGCGg-AGAUCGGCCcGCUGCAggGAa -3'
miRNA:   3'- cCGCagUCUAGCUGG-CGAUGUagUUc -5'
18453 3' -50.9 NC_004681.1 + 39890 0.67 0.942346
Target:  5'- aGGCGggCGGAgacccccagcgcgCGGCCaGCUGCG-CAAGg -3'
miRNA:   3'- -CCGCa-GUCUa------------GCUGG-CGAUGUaGUUC- -5'
18453 3' -50.9 NC_004681.1 + 21332 0.67 0.939338
Target:  5'- uGGaCGU--GGUCGACCGCagcgGCGUCAc- -3'
miRNA:   3'- -CC-GCAguCUAGCUGGCGa---UGUAGUuc -5'
18453 3' -50.9 NC_004681.1 + 42163 0.67 0.934106
Target:  5'- uGGCGUaggcCAGGUUGGCugacuggagCGCUGCAcugcUCAGGu -3'
miRNA:   3'- -CCGCA----GUCUAGCUG---------GCGAUGU----AGUUC- -5'
18453 3' -50.9 NC_004681.1 + 6593 0.67 0.928596
Target:  5'- gGGCGcCA--UgGGCCGCggcaaggACAUCAAGg -3'
miRNA:   3'- -CCGCaGUcuAgCUGGCGa------UGUAGUUC- -5'
18453 3' -50.9 NC_004681.1 + 8930 0.67 0.92281
Target:  5'- cGGCGUCAa--CGGCCuGCUGCAgcguUCGAc -3'
miRNA:   3'- -CCGCAGUcuaGCUGG-CGAUGU----AGUUc -5'
18453 3' -50.9 NC_004681.1 + 13236 0.68 0.916746
Target:  5'- aGCagaAGcgCGACCGCcGCGUCAAGc -3'
miRNA:   3'- cCGcagUCuaGCUGGCGaUGUAGUUC- -5'
18453 3' -50.9 NC_004681.1 + 37060 0.68 0.916746
Target:  5'- gGGCGUucCGGugaCGGCCGCcGCGUgGAGu -3'
miRNA:   3'- -CCGCA--GUCua-GCUGGCGaUGUAgUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.