miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18453 5' -52.7 NC_004681.1 + 39172 0.66 0.928363
Target:  5'- gGGCUUGCAcggcgcggUCGGACaGGUgcUUGACCa- -3'
miRNA:   3'- -UCGAGCGU--------AGCCUGcUUA--AGCUGGcu -5'
18453 5' -52.7 NC_004681.1 + 19342 0.66 0.922646
Target:  5'- gAGgaCGagaCcGACGAGUUCGACCGGg -3'
miRNA:   3'- -UCgaGCguaGcCUGCUUAAGCUGGCU- -5'
18453 5' -52.7 NC_004681.1 + 32857 0.66 0.910404
Target:  5'- cGUUCGCcUUGGugGggUacUCGcagggcGCCGAg -3'
miRNA:   3'- uCGAGCGuAGCCugCuuA--AGC------UGGCU- -5'
18453 5' -52.7 NC_004681.1 + 40151 0.66 0.897096
Target:  5'- uGCUgGCGUCGGccuGCGGGaUCGGCUu- -3'
miRNA:   3'- uCGAgCGUAGCC---UGCUUaAGCUGGcu -5'
18453 5' -52.7 NC_004681.1 + 38318 0.67 0.890049
Target:  5'- cGC-CGCcgCgGGACGucUUCGGCCGc -3'
miRNA:   3'- uCGaGCGuaG-CCUGCuuAAGCUGGCu -5'
18453 5' -52.7 NC_004681.1 + 12066 0.68 0.851088
Target:  5'- cGGC-CGCAU-GGACGAGgccgaguacgUGGCCGAg -3'
miRNA:   3'- -UCGaGCGUAgCCUGCUUaa--------GCUGGCU- -5'
18453 5' -52.7 NC_004681.1 + 12195 0.68 0.851088
Target:  5'- cAGCgagaCGCG-CGGGCGGAccUCGGCCa- -3'
miRNA:   3'- -UCGa---GCGUaGCCUGCUUa-AGCUGGcu -5'
18453 5' -52.7 NC_004681.1 + 40581 0.68 0.842594
Target:  5'- uGCUa-CAUCGuGGCGGcgUCGGCCGc -3'
miRNA:   3'- uCGAgcGUAGC-CUGCUuaAGCUGGCu -5'
18453 5' -52.7 NC_004681.1 + 21317 0.68 0.842594
Target:  5'- aGGCgaccaUCGUcgUGGACGuggUCGACCGc -3'
miRNA:   3'- -UCG-----AGCGuaGCCUGCuuaAGCUGGCu -5'
18453 5' -52.7 NC_004681.1 + 58706 0.68 0.842594
Target:  5'- -cCUCGUugAUCcgauGGGCGAAUUCGACCc- -3'
miRNA:   3'- ucGAGCG--UAG----CCUGCUUAAGCUGGcu -5'
18453 5' -52.7 NC_004681.1 + 13062 0.68 0.815855
Target:  5'- aAGCUCGCAUCGc-CGAGcUCGaaGCCGc -3'
miRNA:   3'- -UCGAGCGUAGCcuGCUUaAGC--UGGCu -5'
18453 5' -52.7 NC_004681.1 + 2472 0.68 0.815855
Target:  5'- cGGC-CGCGUCGaauacuccGACGAGUUCGggugcuacaagcGCCGGu -3'
miRNA:   3'- -UCGaGCGUAGC--------CUGCUUAAGC------------UGGCU- -5'
18453 5' -52.7 NC_004681.1 + 13000 0.69 0.787422
Target:  5'- cGCUgGCAccgCGGACGAcGUggccgCGACUGAc -3'
miRNA:   3'- uCGAgCGUa--GCCUGCU-UAa----GCUGGCU- -5'
18453 5' -52.7 NC_004681.1 + 35894 0.69 0.787422
Target:  5'- uGGCcgCGCcccgcaauggaGUCGGACGAAUacuacggugUCGGCUGGa -3'
miRNA:   3'- -UCGa-GCG-----------UAGCCUGCUUA---------AGCUGGCU- -5'
18453 5' -52.7 NC_004681.1 + 48688 0.69 0.777615
Target:  5'- cAGCUCcCAUgGGcCGAGUUCGGCuuCGAg -3'
miRNA:   3'- -UCGAGcGUAgCCuGCUUAAGCUG--GCU- -5'
18453 5' -52.7 NC_004681.1 + 48813 0.69 0.777615
Target:  5'- cAGCUCGUugaccgCGGGCGAc-UCGaaGCCGAa -3'
miRNA:   3'- -UCGAGCGua----GCCUGCUuaAGC--UGGCU- -5'
18453 5' -52.7 NC_004681.1 + 64887 0.69 0.777615
Target:  5'- cAGCUCGUg--GGGCGAGa-CGACCGGa -3'
miRNA:   3'- -UCGAGCGuagCCUGCUUaaGCUGGCU- -5'
18453 5' -52.7 NC_004681.1 + 3264 0.7 0.747355
Target:  5'- cGCUCGC-UCGGAUGGAa--GGCCa- -3'
miRNA:   3'- uCGAGCGuAGCCUGCUUaagCUGGcu -5'
18453 5' -52.7 NC_004681.1 + 39694 0.7 0.726593
Target:  5'- cGCUCaaauucaGUCGGuCGAAUUCGuCCGAu -3'
miRNA:   3'- uCGAGcg-----UAGCCuGCUUAAGCuGGCU- -5'
18453 5' -52.7 NC_004681.1 + 47933 0.7 0.716069
Target:  5'- -cCUCGCAUgGGGCGAAgacagUCGccauCCGAu -3'
miRNA:   3'- ucGAGCGUAgCCUGCUUa----AGCu---GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.